PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676750598
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 341aa    MW: 36929.1 Da    PI: 7.0515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676750598genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.8e-09184228554
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  676750598 184 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 228
                99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-14177240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-13181235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-6184228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MASHNNNNNP HGNLSDQAPS DDFFEQILGI SNFSASSGSG LSGLSGGLSG VGPPPMMLQL  60
GSGEEGNHHH HHMGAIGGGG GPLGFHNQMF PLGLSLDQGK GQGFLKPEGV HGSGKRFQDD  120
VVDNRCSSMK PFRQVEVKVL LSTVPMQTVF HGQPMSQPAP PMPHQQSAIR PRVRARRGQA  180
TDPHSIAERL RRERIAERIR ALQELVPTVN KTDRAAMIDE IVDYVKFLRL QVKLLAPLQY  240
IHEVLSMSRL GGAGAVAPLV TEMPLSSSIE DETQAVWEKW SNDGTERQVA KLMEENVGAA  300
MQLLQSKALC IMPISLAMAI YHSQPPDTSS SIVKPEMNPP P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188193RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMap676750598
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531531e-137AK353153.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418274.10.0transcription factor bHLH7
SwissprotQ93Y001e-161BH007_ARATH; Transcription factor bHLH7
TrEMBLE4MXA60.0E4MXA6_EUTHA; mRNA, clone: RTFL01-21-H10
TrEMBLV4L2X20.0V4L2X2_EUTSA; Uncharacterized protein
STRINGXP_006418274.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-141bHLH family protein