PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749464
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 278aa    MW: 32289.2 Da    PI: 5.4303
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749464genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.1e-34271192103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e+++d+++++++sw++ g sfvv+d+++f+ ++Lp yFkh+nf+SFvRQLn+YgF+k+++e+         weF ++ F  g++ ll++ik
     676749464  27 FLTKTFEMVDDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIESER---------WEFMNEGFLMGQRGLLKSIK 114
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++s+
     676749464 115 RRTSS 119
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.6E-3620111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5223116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-3323116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.9E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEPSSSSRAW SIPVPMEGLQ EPGPCPFLTK TFEMVDDPNT NHIVSWNRGG ISFVVWDPHS  60
FSATILPLYF KHNNFSSFVR QLNTYGFRKI ESERWEFMNE GFLMGQRGLL KSIKRRTSSS  120
APPSLHHSQG DGHDHDPCVE LRQERHVLMM EISRLRQQEQ RARGYIQAME QRINGAEKKQ  180
RHMMSFLRRA VQNPGLLQQL LEQQRKELEE ASIDQVKPET VEHVSELEAL ALEMQGYGRQ  240
RIDEVEKGLD DGFWEELLMN NDSARDEYEE EEANLKTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-232711920123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749464
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373041e-168AC237304.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116993.11e-170PREDICTED: heat stress transcription factor A-7b isoform X2
SwissprotQ9M1V51e-155HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLA0A397Y2H41e-173A0A397Y2H4_BRACM; Uncharacterized protein
STRINGBra007739.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-150HSF family protein