PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676749390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 252aa MW: 27549.8 Da PI: 7.5035 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.3 | 4.3e-18 | 169 | 203 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l 676749390 169 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 203 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 4.1E-85 | 2 | 251 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 10.989 | 163 | 199 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.9E-15 | 163 | 213 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.99E-14 | 165 | 227 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.3E-13 | 166 | 201 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.36E-13 | 169 | 215 | No hit | No description |
Pfam | PF00320 | 6.9E-16 | 169 | 203 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 169 | 194 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
MDVYGLSSPD LLRIDDLLDF SNDEIFSSSS SSAASSSENP FNFPSSASTS FPTPPPPPSS 60 LLTDFTHDLC VPSDDAAHLE WLSRFVDDSF SDYPANPLTM TVRPEMSFTG KPRSRRSRAP 120 APSVAGTWAP MPESELCYSL AKRKPTKKLE HEAMTTVDGG GGGGSRRCCT HCASEKTPQW 180 RTGPLGPKTL CNACGVRFKS GRLVPEYRPA SSPTFVLTQH SNSHRKVMEL RRQKEQLDSS 240 SSAVHLPTFH PQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00415 | DAP | Transfer from AT3G60530 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676749390 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402573.1 | 1e-133 | GATA transcription factor 4 | ||||
Swissprot | O49743 | 1e-121 | GATA4_ARATH; GATA transcription factor 4 | ||||
TrEMBL | E4MXE9 | 1e-132 | E4MXE9_EUTHA; GATA transcription factor | ||||
TrEMBL | V4NDG2 | 1e-132 | V4NDG2_EUTSA; GATA transcription factor | ||||
STRING | XP_006402573.1 | 1e-133 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3203 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60530.1 | 1e-102 | GATA transcription factor 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|