PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676749212

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

MYB

Protein Properties

Length: 309aa MW: 34977.2 Da PI: 6.3818

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676749212	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.8	1.2e-13	11	56	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l++ vk++G+++W++I ++ + Rt+k+c++rw + 676749212 11 KGPWKAEEDEVLINHVKRYGPRDWSSIRSKGLLQRTGKSCRLRWVN 56 79***********************8887799********87 PP
2	Myb_DNA-binding	45.7	1.5e-14	67	107	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE++l +d+ ++ G++ W++Ia +++ gRt++++k++w 676749212 67 KFSAEEEKLVIDLQAEIGNK-WARIATHLP-GRTDNDVKNFWS 107 79****************.*****.*********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-22	4	59	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.325	6	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.02E-27	9	106	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-11	10	60	IPR001005	SANT/Myb domain
CDD	cd00167	5.75E-11	13	58	No hit	No description
Pfam	PF13921	8.2E-12	14	64	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.8E-19	60	112	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.623	63	114	IPR017930	Myb domain
SMART	SM00717	5.9E-13	64	112	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-13	67	107	IPR001005	SANT/Myb domain
CDD	cd00167	3.84E-10	67	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MEASKKEEIK KGPWKAEEDE VLINHVKRYG PRDWSSIRSK GLLQRTGKSC RLRWVNKLRP 60 NLKNGCKFSA EEEKLVIDLQ AEIGNKWARI ATHLPGRTDN DVKNFWSSRL KRLARILHNS 120 SDASSSSYCN PKPSSHRNNK GKNVKPMQSF NPSQSFGLVE EDVTASSSSS KILPYSSSSA 180 DQVDETLRFP ELGIKLERQP FSFGTDLVIA ETTTPLLSES QDVNKQAVIP FSPESRELLA 240 RLDDPYFYDI LGPADSSEPL FALPQPFFEP SPAPRRCRHV SKDDEESDVF FDDFPADMFD 300 QVDDPIRSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-27	8	112	24	126	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as a positive regulator of male germline development by promoting both gametic cell specification and cell cycle progression (PubMed:15694308, PubMed:15618418, PubMed:19300502, PubMed:21285328). Binds to canonical MYB sites 5'-AACCGTC-3', 5'-AAACCGC-3' and 5'-AACCGT-3' in promoters to trigger the expression of male germline-specific or enriched genes (e.g. MGH3, GEX2 and GCS1), including those required for fertilization (PubMed:21285328, PubMed:19300502). Required for sperm cell specification leading to pollen maturation by activating a germline-specific regulon (PubMed:21285328, PubMed:15694308, PubMed:15618418, PubMed:19300502). Involved in pollen mitosis entry at G2-M transition via the regulation of CYCB1-1, DAZ1 and DAZ2 expression (PubMed:15618418, PubMed:19300502, PubMed:24876252). {ECO:0000269\|PubMed:15618418, ECO:0000269\|PubMed:15694308, ECO:0000269\|PubMed:19300502, ECO:0000269\|PubMed:21285328, ECO:0000269\|PubMed:24876252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676749212

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA 159 (miR159); the production of miR159 is stimulated by the anaphase promoting complex/cyclosome (APC/C) (PubMed:21441434). Activated by ARID1 in male germline cells via specific histone acetylation regulation (e.g. H3K9Ac) (PubMed:25057814). {ECO:0000269\|PubMed:21441434, ECO:0000269\|PubMed:25057814}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006402579.2	0.0	transcription factor DUO1
Swissprot	A0A178VEK7	1e-163	DUO1_ARATH; Transcription factor DUO1
TrEMBL	V4LNL0	0.0	V4LNL0_EUTSA; Uncharacterized protein
STRING	XP_006402579.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6551	28	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	1e-147	MYB family protein

Publications ? help Back to Top
Zheng B,He H,Zheng Y,Wu W,McCormick S An ARID domain-containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana. PLoS Genet., 2014. 10(7): p. e1004421 [PMID:25057814] Peters B, et al. A Conserved cis-Regulatory Module Determines Germline Fate through Activation of the Transcription Factor DUO1 Promoter. Plant Physiol., 2017. 173(1): p. 280-293 [PMID:27624837] Zheng Z, et al. Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy. Plant Physiol., 2017. 174(3): p. 1764-1778 [PMID:28515145]