PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749200
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 327aa    MW: 37280 Da    PI: 5.6609
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749200genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1652.7e-51111391128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                +ppGfrFhPt+eel+++yL+kk+++ k++l +vi++vd++k+ePwd+++  k+ +  +++wyfFs++dkky+tg+r+nrat  g+Wkatg+dk ++s +g
  676749200  11 VPPGFRFHPTEEELLQYYLRKKISNIKIDL-DVIRDVDLNKLEPWDIQEmcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATMVGFWKATGRDKIIYS-NG 108
                69****************************.9***************962433332455**************************************.99 PP

        NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +g++ktLvfykgrap+g+k+dW+mheyrl
  676749200 109 DRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
                99***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-568176IPR003441NAC domain
PROSITE profilePS5100554.54311176IPR003441NAC domain
PfamPF023652.1E-2712139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MNISVNGQSQ VPPGFRFHPT EEELLQYYLR KKISNIKIDL DVIRDVDLNK LEPWDIQEMC  60
KIGTTPQNDW YFFSHKDKKY PTGTRTNRAT MVGFWKATGR DKIIYSNGDR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD ESVLVASSNL DDDVTVETCE IIGGDEGWVV CRVFMKKSLC  180
KSVISSPPRS VKTSSFNEET IDQFLEVVGQ SCKEEIISDS FLKLPNLECP NNTVASYQRL  240
MDDQVNNCHV TSWGALDRLV ASQLNGPNSH YEIPQSPIYG LNRPGYYNTG LTPDYYIPEM  300
DVWNDTDFVR TTISSSNPLC HVSNSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-47817814167NO APICAL MERISTEM PROTEIN
1ut4_B1e-47817814167NO APICAL MERISTEM PROTEIN
1ut7_A1e-47817814167NO APICAL MERISTEM PROTEIN
1ut7_B1e-47817814167NO APICAL MERISTEM PROTEIN
3swm_A1e-47817817170NAC domain-containing protein 19
3swm_B1e-47817817170NAC domain-containing protein 19
3swm_C1e-47817817170NAC domain-containing protein 19
3swm_D1e-47817817170NAC domain-containing protein 19
3swp_A1e-47817817170NAC domain-containing protein 19
3swp_B1e-47817817170NAC domain-containing protein 19
3swp_C1e-47817817170NAC domain-containing protein 19
3swp_D1e-47817817170NAC domain-containing protein 19
4dul_A1e-47817814167NAC domain-containing protein 19
4dul_B1e-47817814167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269|PubMed:16214898}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00015PBMTransfer from AT3G61910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710674.10.0NAC domain-containing protein 66-like
SwissprotQ9M2740.0NAC66_ARATH; NAC domain-containing protein 66
TrEMBLA0A3P6GGZ20.0A0A3P6GGZ2_BRAOL; Uncharacterized protein
STRINGBra007640.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77828124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.10.0NAC domain protein 66
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]