PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749058
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 316aa    MW: 34728 Da    PI: 8.4894
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749058genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18161215256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++keq  +Lee F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  676749058 161 RKKLRLSKEQALVLEETFKEHSTLNPKQKMVLAKQLNLRTRQVEVWFQNRRARTK 215
                788899***********************************************98 PP
2HD-ZIP_I/II121.93.1e-39161250191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+ +LEe+F+e+++L+p++K+ la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
    676749058 161 RKKLRLSKEQALVLEETFKEHSTLNPKQKMVLAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVSELR-AL 250
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.2E-351115IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.0E-18136218IPR009057Homeodomain-like
SuperFamilySSF466898.55E-19144218IPR009057Homeodomain-like
PROSITE profilePS5007117.119157217IPR001356Homeobox domain
SMARTSM003896.2E-15159221IPR001356Homeobox domain
CDDcd000866.16E-14161218No hitNo description
PfamPF000469.9E-16161215IPR001356Homeobox domain
PROSITE patternPS000270192215IPR017970Homeobox, conserved site
PfamPF021837.6E-11217251IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.0E-26217260IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGERDDGLGL SLSLSLGSNQ KESSPRLNPM PLASYSSSSH MHMQNHYNHP QKIQNSWIQM  60
FQSSERNSDV RSFLRGIDVN RDASRVVVDV EDDAGVSSPN STVSSVMSGK RNEREMVAAA  120
AAAAGGGRLV EDNEAERASS SLGGVGSDDE DGGGNGDDGS RKKLRLSKEQ ALVLEETFKE  180
HSTLNPKQKM VLAKQLNLRT RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ETLTEENRRL  240
QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSSVAPPVM TSSSPMGPMS  300
PWAAIPLRQR PAAGSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165SRKKLRL
2209217RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749058
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082908.11e-180PREDICTED: homeobox-leucine zipper protein HAT3-like
RefseqXP_019082909.11e-180PREDICTED: homeobox-leucine zipper protein HAT3-like
RefseqXP_019082910.11e-180PREDICTED: homeobox-leucine zipper protein HAT3-like
RefseqXP_019082911.11e-180PREDICTED: homeobox-leucine zipper protein HAT3-like
SwissprotP466021e-173HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLD7LRP71e-175D7LRP7_ARALL; Uncharacterized protein
STRINGBostr.13158s0030.1.p1e-180(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-134homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]