PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676747066
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 466aa    MW: 52592.2 Da    PI: 5.8189
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676747066genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.8e-5191371128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lp+GfrF+Ptdeelv +yL+ k++g++ ++ +vi+evdi+k+ePwdLp  + vk++++ew fF++ d+ky+tg+r nrat +gyWkatgkd++v+s +++
  676747066   9 LPVGFRFSPTDEELVRYYLRLKINGRDDDV-RVIREVDICKWEPWDLPdfSVVKTTDSEWLFFCPLDRKYPTGSRMNRATLAGYWKATGKDRKVKSGNTK 107
                79*************************999.99***************6447888999****************************************** PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                ++g+k+tLvfy+grapkg++t+W+mheyr+
  676747066 108 VIGVKRTLVFYTGRAPKGTRTSWIMHEYRA 137
                ****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-585160IPR003441NAC domain
PROSITE profilePS5100555.4269160IPR003441NAC domain
PfamPF023656.9E-2510136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEVLSLESLP VGFRFSPTDE ELVRYYLRLK INGRDDDVRV IREVDICKWE PWDLPDFSVV  60
KTTDSEWLFF CPLDRKYPTG SRMNRATLAG YWKATGKDRK VKSGNTKVIG VKRTLVFYTG  120
RAPKGTRTSW IMHEYRATEK DLDGTNSGQN PFVICKLFKK QDVVHGAATE DLKSCEVEPA  180
VSSPTVVDDM RSEVELSEVS LVFPKTEETK HSDVAESSLA VSGECHSEIS APELDNIEWH  240
SYLELESLDH NLFSPLHSQV QSELGSSFDV FQTGSNELSG NQNGAHIQTQ YGSNDTDEYM  300
LELLESTLQI PYEFPEQKPL VQPTPEQILY EPQNLFNTRN KISNDVSETG IQIRARRAQA  360
PGSAEQFAMQ GNASRRLRLQ VNHNSHKSEA DNPEIQCIKK EIKDTAGETE TKGCGNFIRS  420
KSRTEFIFKK IAAMGCSHKV LFRVGVVAVV FAMSVCSLTR LTEKFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-46416112166NO APICAL MERISTEM PROTEIN
1ut4_B7e-46416112166NO APICAL MERISTEM PROTEIN
1ut7_A7e-46416112166NO APICAL MERISTEM PROTEIN
1ut7_B7e-46416112166NO APICAL MERISTEM PROTEIN
3swm_A9e-46416115169NAC domain-containing protein 19
3swm_B9e-46416115169NAC domain-containing protein 19
3swm_C9e-46416115169NAC domain-containing protein 19
3swm_D9e-46416115169NAC domain-containing protein 19
3swp_A9e-46416115169NAC domain-containing protein 19
3swp_B9e-46416115169NAC domain-containing protein 19
3swp_C9e-46416115169NAC domain-containing protein 19
3swp_D9e-46416115169NAC domain-containing protein 19
4dul_A7e-46416112166NAC domain-containing protein 19
4dul_B7e-46416112166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676747066
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457292.10.0PREDICTED: NAC domain-containing protein 91-like
SwissprotQ9LKG80.0NAC91_ARATH; NAC domain-containing protein 91
TrEMBLV4MKT40.0V4MKT4_EUTSA; Uncharacterized protein
STRINGBostr.5763s0059.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.20.0TCV-interacting protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  3. Li Y, et al.
    The interaction between Turnip crinkle virus p38 and Cucumber mosaic virus 2b and its critical domains.
    Virus Res., 2016. 222: p. 94-105
    [PMID:27288723]