PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745720
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 306aa    MW: 34281.4 Da    PI: 9.4387
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745720genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-094493253
               HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
               +  h  +Er+RR+++ + f+ Lr++lP       ++K   ++ +  Av++Ik+
  676745720 44 KLLHRDIERQRRQEMATLFASLRSHLPLqY---IKGKRAVSDHVNGAVNFIKD 93
               6679************************66...9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.41E-1239113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6554294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-744112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-74493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-74793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDPYQNPKPK GYQRQRPFGS AGEGGSSGGS DIPHETDDTK KKKKLLHRDI ERQRRQEMAT  60
LFASLRSHLP LQYIKGKRAV SDHVNGAVNF IKDTETRIKE LSARRDELSR ETCPTYKSNP  120
DPATTGSELG KSYPASVMVQ PCVSGFEVAV SSNSSGPEAL PLSRVLGALQ EQGLDIISSL  180
TTRVNERLMH TIQVEVNSFG CLDLAWLQQK LVEELILSTG LLVDILKCVC RYHLFVGPVE  240
ISKAFMKPHL GSISWKFILR WRHSFGLNKF TCIRILWVDH KVHHHSPHRT VKTGCDICNS  300
ALILSI
Cis-element ? help Back to Top
SourceLink
PlantRegMap676745720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741161.11e-131transcription factor bHLH126-like isoform X1
SwissprotQ9STJ61e-117BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A3P6EWZ81e-129A0A3P6EWZ8_BRAOL; Uncharacterized protein
STRINGBra013889.1-P1e-130(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-117bHLH family protein