PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676744860
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 700aa    MW: 77197.7 Da    PI: 7.301
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676744860genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.2e-06299319526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C++f + G Ck Gd C +aHg
  676744860 299 PCPDFKK-GSCKQGDMCEYAHG 319
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.66E-1731173IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-1837189IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.26380173IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-1080149IPR020683Ankyrin repeat-containing domain
SMARTSM002480.1380110IPR002110Ankyrin repeat
CDDcd002044.78E-1582158No hitNo description
PROSITE profilePS5008812.609115150IPR002110Ankyrin repeat
SMARTSM002487.4E-6115147IPR002110Ankyrin repeat
SMARTSM003561.2E-4294320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915299321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-4299321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-4327357IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.831329353IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MCGLSKKLDT ENNTLSDQET DPLPKPMNDA EWEHSFSALL EFAADNNVEG FKRQLSVVPC  60
INQMGLWYIR RRFVRRMVVE QRTPLMVASI YGSLDVVKLI LSFPEAELNL SCGPDKSTAL  120
HCAASGGSVN SLDVVKLLLS AGADPNIPDA HGNRPVDVLV VSPHAPGLRT ILEEILKKDE  180
TVSEDLHASS SSLGSSFRSL SSSPDNGSSL LSLDSVSSPT KANGTDGNFA SEKKEYPIDP  240
SLPDIKSGIY STDEFRMFSF KIRPCSRAYS HDWTECPFAH PGENARRRDP RKFHYTCVPC  300
PDFKKGSCKQ GDMCEYAHGV FECWLHPAQY RTRLCKDGMG CNRRVCFFAH ANEELRPLYA  360
STGSGLPSPR ASSASTMDMA SVLNMLPGSP SAAQHSFTPP ISPSGNGAMP HSSMGWPQQN  420
IPALHLPGSN VQLSRLRSSL NARDIPSEQF SMLQEFEMQR QLVGDMSSPR FMNHSARPKT  480
LTPSNLEDLF SAEVSSPRFS DQLAVSSVLS PSHKSALLNQ LQNNKQSMLS PIKTNLMSSP  540
KNVEQHSLRQ QTSSPRAMEP ISPMNSRMKQ QLHSRSLSSR DFGSNLPRDM MPTDSGSPLS  600
PWSSWDQNHG NKVDWSVQSD ELGRLRKSHS LANNNSNREA DVTWVQQLVK DSASPRNSNR  660
AMNMNGARPV VQGGSSVNPH SDGRESDILD AWLEQLQLDR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676744860
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525220.0AK352522.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-B13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399772.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLE4MVH50.0E4MVH5_EUTHA; mRNA, clone: RTFL01-01-B13
TrEMBLV4KTE70.0V4KTE7_EUTSA; Uncharacterized protein
STRINGXP_006399772.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain