PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676744088
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 267aa    MW: 30319.3 Da    PI: 4.7091
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676744088genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-1860113356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++  +q+++Le+ Fe ++++  e++++LA++lgL+ rqV vWFqNrRa++k
  676744088  60 KKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWK 113
                45578899*********************************************9 PP
2HD-ZIP_I/II128.72.4e-4159151193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl  +qvk+LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++++L +e+++
    676744088  59 EKKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKNQYDSLRHNFDSLRRDNDSLLQEISK 151
                  69*************************************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-1947117IPR009057Homeodomain-like
PROSITE profilePS5007116.95755115IPR001356Homeobox domain
SMARTSM003891.5E-1658119IPR001356Homeobox domain
PfamPF000461.2E-1560113IPR001356Homeobox domain
CDDcd000861.85E-1660116No hitNo description
Gene3DG3DSA:1.10.10.601.7E-1963122IPR009057Homeodomain-like
PRINTSPR000315.7E-68695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000315.7E-695111IPR000047Helix-turn-helix motif
PfamPF021835.6E-17115156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MKRLSSSDSM CGLLSNSTDE QSPRGFGSNF QSMLDGYEED GTIVEEYSGN HHHMGGLSEK  60
KRRLRVDQVK ALEKNFELEN KLEPERKTKL AQELGLQPRQ VAVWFQNRRA RWKTKQLEKD  120
YGVLKNQYDS LRHNFDSLRR DNDSLLQEIS KMKAKMNGEE DNINVKDTME SDISAVKEES  180
ISLPEKVSSP PQFLEHSTGF NYRRSFTDLC DLIPSSNVLD AGSSDSCDSS AVLNDETSSD  240
NGSDYVEGVF TDNESHAEIY SDQSYKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676744088
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527321e-175AK352732.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411810.11e-150homeobox-leucine zipper protein ATHB-16
RefseqXP_009130694.11e-150PREDICTED: homeobox-leucine zipper protein ATHB-16-like isoform X2
RefseqXP_013731663.11e-150homeobox-leucine zipper protein ATHB-16-like isoform X2
SwissprotQ940J11e-143ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A398AHA21e-148A0A398AHA2_BRACM; Uncharacterized protein
TrEMBLA0A3P5Z0V21e-148A0A3P5Z0V2_BRACM; Uncharacterized protein
TrEMBLE4MW351e-148E4MW35_EUTHA; mRNA, clone: RTFL01-02-C17
TrEMBLM4D5Q11e-148M4D5Q1_BRARP; Uncharacterized protein
TrEMBLV4MKN01e-148V4MKN0_EUTSA; Uncharacterized protein
STRINGBra011808.1-P1e-149(Brassica rapa)
STRINGXP_006411810.11e-149(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-123homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]