PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743574
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 408aa    MW: 46417.3 Da    PI: 7.3439
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743574genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12240285454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +h e+Er+RR+++N++f  Lr ++P+      ++++Ka+ L  Av YI +L
  676743574 240 NHVEAERQRREKLNHRFYALRAVVPNV-----TRMDKASLLSDAVSYIENL 285
                799***********************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-2933186IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.799236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17239303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-13239286No hitNo description
PfamPF000104.6E-10240285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-16240301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-14242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDNLTFLPPL SSSILSFTQQ TPAIVSSSPA DLLQHKLRFV VESSSDRWAY VIFWQKKIDD  60
KSDRSYLVWV DGYFGGNKNK SQENYTYNSM ECELMMDGGD LEWFYATSIN GGNWSPSTKI  120
SCDSLVWLTG SDEIRFSNCD RAIEAGFHGI HTFVSIPIHN NCVVELGSSD TIKQNWNVIN  180
RLKSIFRSGE TLKHTNQTGS NPKPVVSDHS EVGSQQSTME RKRRSSTETA EKLNLRPVMN  240
HVEAERQRRE KLNHRFYALR AVVPNVTRMD KASLLSDAVS YIENLKSRIN GLETEIKRLK  300
TYTLEDNSTN TSPSSVGQVN QKPWETSHFE VQVKIVGEEA MVRVETENVN HPTSALMNAL  360
MEMDCRVQHA SASRMSQVMV QDVVVWVPDE LRSENRLRTT LVRKLRSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-20239300768Transcription factor MYC2
5gnj_B1e-20239300768Transcription factor MYC2
5gnj_E1e-20239300768Transcription factor MYC2
5gnj_F1e-20239300768Transcription factor MYC2
5gnj_G1e-20239300768Transcription factor MYC2
5gnj_I1e-20239300768Transcription factor MYC2
5gnj_M1e-20239300768Transcription factor MYC2
5gnj_N1e-20239300768Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743574
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287856.10.0transcription factor bHLH14
SwissprotO230900.0BH014_ARATH; Transcription factor bHLH14
TrEMBLA0A1J3JK910.0A0A1J3JK91_NOCCA; Transcription factor bHLH14 (Fragment)
STRINGBostr.7365s0026.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]