PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743534
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 310aa    MW: 34542.1 Da    PI: 6.6739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743534genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.5e-15109160155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++     ++ + a+i+  A++YIk+L+
  676743534 109 QRMTHIAVERNRRRQMNQHLNSLRSLMPPS---FLQRGDQASIVGGAIDYIKELE 160
                79***************************9...89*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.1E-14107163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-17107180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.90E-14107164No hitNo description
PROSITE profilePS5088816.025108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-13109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEGLMRFGGL EEQFGQISEN AIDEKTPFLQ MLQCVEPTFS TTEPNQILQS LLQIQTLEQK  60
SCLTLETIKR DPDQAKDPVK ENGAAATVKE KRKRKRTRAP KNKDEVENQR MTHIAVERNR  120
RRQMNQHLNS LRSLMPPSFL QRGDQASIVG GAIDYIKELE QLLQCLEAEK QSEGSNENPK  180
TASSSSSSSR ACTTNSSVSS VSTTPEDGFT ARFGGGETAE VEVTVIQNHV SLKVRCKRGK  240
GQILRAIVSI ENLKLSILHL TIASSFDFVF YSFNLKIEDG CKVGSADEIA TAIHQIFEQI  300
NGEMMWSNLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109120RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743534
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531010.0AK353101.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-P03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453088.11e-179PREDICTED: transcription factor bHLH57
SwissprotQ9M1281e-166BH057_ARATH; Transcription factor bHLH57
TrEMBLE4MX541e-173E4MX54_EUTHA; mRNA, clone: RTFL01-16-P03
TrEMBLV4KIY21e-173V4KIY2_EUTSA; Uncharacterized protein
STRINGXP_006396347.11e-174(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146961721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-137bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]