PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676743466 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 24020 Da PI: 5.0629 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.1 | 3e-38 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC+++Cv+apyf +e+ +++fa+vhk+FGasn +kll +p ++r +a+ +l yeA ar+rdPvyG+vg+i++lq+q+++l+aela++++ 676743466 11 PCGACKFLRRKCVAECVFAPYFDSEEgTARFAAVHKVFGASNASKLLLMIPASRRLEAVVTLSYEALARLRDPVYGCVGHIFALQHQVMNLQAELATVQT 110 7*********************998879*********************************************************************998 PP DUF260 100 e 100 + 676743466 111 H 111 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.452 | 10 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-37 | 11 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSGSTTGIGS PCGACKFLRR KCVAECVFAP YFDSEEGTAR FAAVHKVFGA SNASKLLLMI 60 PASRRLEAVV TLSYEALARL RDPVYGCVGH IFALQHQVMN LQAELATVQT HLSTLQRLPP 120 PPKQQNNSQT EAASSTKAPL IASVDNNDND NNNVSSSLLH IHGMSQEQPQ EDIEVPTESV 180 DFSTLLGLED PLDEDGDLNT LAREFVSKYL TEGKYRPSSP I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-38 | 4 | 112 | 4 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-38 | 4 | 112 | 4 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676743466 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018465751.1 | 1e-131 | PREDICTED: LOB domain-containing protein 31 isoform X2 | ||||
Swissprot | O81322 | 1e-118 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A078JPX1 | 1e-127 | A0A078JPX1_BRANA; BnaUnng02520D protein | ||||
TrEMBL | A0A291LR22 | 1e-127 | A0A291LR22_BRARR; Transcription factor LBD31 | ||||
TrEMBL | A0A3P5XT75 | 1e-127 | A0A3P5XT75_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F8B0 | 1e-127 | M4F8B0_BRARP; Uncharacterized protein | ||||
STRING | Bra037322.1-P | 1e-128 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 1e-103 | LOB domain-containing protein 31 |