PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676743142

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

C2H2

Protein Properties

Length: 230aa MW: 25812.1 Da PI: 10.7905

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676743142	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H 676743142 69 FSCNYCQRKFYSSQALGGHQNAH 91 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.56E-7	65	96	No hit	No description
PROSITE profile	PS50157	11.427	69	96	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	71	91	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MDPSINGEQE MLKLRKRGHQ DLELGLTLLP RATTSSELNL IDSFRTSSSS TSHHHHNHQQ 60 DNLEDQRVFS CNYCQRKFYS SQALGGHQNA HKRERTLAKR GQFYKMGLSS SSSPSSAFAF 120 GHGSVSRFAS IASLPLHGSA SNRSTLGIQA HSTIHNPFLG RQAASLSHVF KQSVHRKPVI 180 GKVLPEKFHL EIASNKNSNI STPKLERIGY FKSKQEDRHQ FKKIDLTLKL

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:24808098, ECO:0000305\|PubMed:8980531}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676743142

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269\|PubMed:10794528}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_178188.1	1e-121	zinc-finger protein 1
Refseq	XP_013590742.1	1e-121	PREDICTED: zinc finger protein 1-like
Swissprot	Q42485	1e-122	ZFP1_ARATH; Zinc finger protein 1
TrEMBL	A0A0D3D1Y4	1e-119	A0A0D3D1Y4_BRAOL; Uncharacterized protein
TrEMBL	A0A384KNY0	1e-119	A0A384KNY0_ARATH; ZFP1
TrEMBL	Q0V814	1e-119	Q0V814_ARATH; At1g80730
STRING	AT1G80730.1	1e-120	(Arabidopsis thaliana)
STRING	Bo6g124280.1	1e-120	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11858	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-120	zinc-finger protein 1

Publications ? help Back to Top
Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098]