PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743110
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 265aa    MW: 30152.7 Da    PI: 4.889
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743110genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.98.8e-23103164159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                l+Dg++WrKYGqK++k s + r YYrC++a   +C+++k+v++ ++ p+v+ +tY g+H +e
  676743110 103 LNDGFSWRKYGQKKIKTSSHQRCYYRCAYAkdrNCNATKRVQQIQDTPSVFRTTYVGKHVCE 164
                58***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.84198166IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-24100164IPR003657WRKY domain
SuperFamilySSF1182906.15E-23100165IPR003657WRKY domain
SMARTSM007746.0E-33103165IPR003657WRKY domain
PfamPF031065.7E-23104163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MFHGVDKAVE ALLRGQESAT RLKTVLEQSR TGSVPTEPLF DTVLDSFSFA LSLFANLTSS  60
YPQPHRESSQ TKAAPMTRKS PKKTSYGKND LEHYIDDSPT PLLNDGFSWR KYGQKKIKTS  120
SHQRCYYRCA YAKDRNCNAT KRVQQIQDTP SVFRTTYVGK HVCEVDAFSQ PNDDITNGSK  180
MIRFDKIDQA MSELVMPQLV PVDNQVITIE DDQGTDQIMN LECDSNELLV DDDDQLWGYQ  240
FPPSSLGDFM FLDDISAFEY NPFHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-15103164869OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405092.11e-180probable WRKY transcription factor 64
SwissprotQ9C5577e-86WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBLV4L8491e-179V4L849_EUTSA; Uncharacterized protein
STRINGXP_006405092.11e-180(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.13e-88WRKY DNA-binding protein 64