PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676742370
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 830aa    MW: 90851.2 Da    PI: 7.4514
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676742370genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.8e-07417437526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C++f++ G C++Gd C +aHg
  676742370 417 PCPDFRK-GACRRGDMCEYAHG 437
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.44E-17150293IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.8E-18152294IPR020683Ankyrin repeat-containing domain
CDDcd002044.27E-15158292No hitNo description
PfamPF127961.3E-10195268IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.077200303IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0078200230IPR002110Ankyrin repeat
PRINTSPR014154.9E-5201216IPR002110Ankyrin repeat
PROSITE profilePS5008812.502235270IPR002110Ankyrin repeat
SMARTSM002480.0036235267IPR002110Ankyrin repeat
PRINTSPR014154.9E-5254268IPR002110Ankyrin repeat
SMARTSM003564.0E-6412438IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-5417437IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4417439IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582417439IPR000571Zinc finger, CCCH-type
SMARTSM0035668447470IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.963447471IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MCHVRSPYAW WTPVTLLKFC LIILSITPAT GYRFLPFSFS KLTPSHSPSI PPVHPVTPPK  60
AKRSIENPVC LIVLIVQCIY STCLLNKDQK GVKLTSDKVS LRKSETTDGR MCCGSDRLNQ  120
IVSSSTSTSP VSVEETNLLT NTEMNHLRVE TEDTFASLLE LAANNDVEGV RLSIDRDPSC  180
VDEAGLWYGR QKGSKAMVND QRTPLMVAAT YGSIDVIKLI VSLTDANVNR ACGNDQTTAL  240
HCAASGGAVN AIQVVKLLLA AGADLNMLDA EGQRPGDVIV VPPKLEGVKL MLQELLSADG  300
SSTAERNLRV VTNVPSRSST SPTHSPTEEN GEFGSGSPLS SPFKLKSTEF KKEYPVDPSL  360
PDIKNSIYAT DEFRMYSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVPCPD  420
FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTGCA RRVCFFAHTP EELRPLYAST  480
GSAVPSPRSN ADFAAALSLL PGSPSAVSVM SPLSPSAAGN GMSHSNMAWP QPNVPALHLP  540
GSNLQSSRLR SSLNARDIPQ DEFNMLADYE QQQLLNEFSN SLSRSGRMKS LPPSNLEDLF  600
SAEGSSSPRF TDSALASAVF SPTHKSAVFN QFQQQQQQQQ QQSMLSPINT SFSSPKSVDH  660
SLFSGGGRMS PRNVVEPISP MSSRVSMLAQ CVKQQQQQQQ QQQQQQHQFR SLSSRELRTN  720
SSPIVGSPVN NNSWSSKWGS SNGKPDWGMS SEALGKLRSS TSFDGDEPDV SWVQSLVKES  780
PTEAKEKAAT SSYTGENAKQ PTAVEAVMDH AGLEAWIEQM QLDQLVAQQN
Cis-element ? help Back to Top
SourceLink
PlantRegMap676742370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525550.0AK352555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-D15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411461.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLE4MVK80.0E4MVK8_EUTHA; mRNA, clone: RTFL01-01-D15
TrEMBLV4M9940.0V4M994_EUTSA; Uncharacterized protein
STRINGXP_006411461.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]