PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676742304

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 403aa MW: 44913.4 Da PI: 4.7586

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676742304	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.5	4.1e-07	201	227	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L+el+P + 676742304 201 NHSLAERARREKINARMKLLQELVPGC 227 79***********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.90E-6	195	267	No hit	No description
SuperFamily	SSF47459	3.27E-12	195	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-12	197	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.916	197	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-4	201	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-6	203	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MDLTEAFGAR SGVRPSREAV TGLESLNFID EIRQLTTMPP ENTASFTALL EMPATQAMEL 60 LHFTDTSCSQ ATGDIAPPPT LHPFETLTFP SNPLLLDRAA RFSVIAAEQT GNFSGESVPS 120 NSSGNLVERV KSEPDDTDSS QRLVSYPTVE NQNQNQNNSC GKRKERGKKV KSSMKKTKSS 180 EEAEKLPYVH VRARRGQATD NHSLAERARR EKINARMKLL QELVPGCDKL VLLMSDLPES 240 CDLQIQGTAL VLDEIINHVQ SLQRQVEMLS MRLAAVNPRI DFNLDSILAS ENGSLMDGSF 300 NGESYHQLQQ WPIDGYHQPE WGREEDINEA NFLMASSDTL HPNQSRKWED WELPCYITSF 360 LTIVILGVGL NAKPDLSIET WAHQKALERL EMERLASAGD SSD

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MDLTEAFGAR SGVRPSREAV TGLESLNFID EIRQLTTMPP ENTASFTALL EMPATQAMEL  60
LHFTDTSCSQ ATGDIAPPPT LHPFETLTFP SNPLLLDRAA RFSVIAAEQT GNFSGESVPS  120
NSSGNLVERV KSEPDDTDSS QRLVSYPTVE NQNQNQNNSC GKRKERGKKV KSSMKKTKSS  180
EEAEKLPYVH VRARRGQATD NHSLAERARR EKINARMKLL QELVPGCDKL VLLMSDLPES  240
CDLQIQGTAL VLDEIINHVQ SLQRQVEMLS MRLAAVNPRI DFNLDSILAS ENGSLMDGSF  300
NGESYHQLQQ WPIDGYHQPE WGREEDINEA NFLMASSDTL HPNQSRKWED WELPCYITSF  360
LTIVILGVGL NAKPDLSIET WAHQKALERL EMERLASAGD SSD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676742304

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176634	1e-100	AK176634.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL25-17-F11.
GenBank	AY065411	1e-100	AY065411.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
GenBank	AY096521	1e-100	AY096521.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020885016.1	1e-165	transcription factor bHLH48
Swissprot	Q8VZ02	1e-156	BH048_ARATH; Transcription factor bHLH48
TrEMBL	D7LI39	1e-163	D7LI39_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.4__2381__AT2G42300.1	1e-164	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	1e-154	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]