PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676742220
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 278aa    MW: 31042.9 Da    PI: 9.1222
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676742220genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.8e-3154107255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                prlrWtp+LH +Fv+av++LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+
  676742220  54 PRLRWTPDLHLSFVRAVQRLGGPHRATPKLVLQMMNLKGLSIAHVKSHLQMYRS 107
                8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.82150110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2850108IPR009057Homeodomain-like
SuperFamilySSF466898.42E-1454108IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-2254109IPR006447Myb domain, plants
PfamPF002492.5E-955106IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDGTSSPEEC STWLDLNREE AVEKNNEEES SVEDEDQQVT SSNNVRQYVR SNMPRLRWTP  60
DLHLSFVRAV QRLGGPHRAT PKLVLQMMNL KGLSIAHVKS HLQMYRSKKL EASSLHEVGG  120
MMGGQRSYLL DMINIPYGDL RHVYSSKTFP SRVHNQGAVF ANPGGNYVMR PSSLCNGFSG  180
NEWHGVRGGP NRDSIESKTL PLLEISKTTN EKRIREEQAR EVSSLKRSRP MSGGGGNLLP  240
EIANCRQKPT DGINTMLSLS LFSTSSGDRN VASDRVER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-1755109357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1755109357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1755109357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1755109357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676742220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411533.11e-147uncharacterized protein LOC18026464
TrEMBLV4P1391e-146V4P139_EUTSA; Uncharacterized protein
STRINGXP_006411533.11e-146(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.11e-107G2-like family protein