PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676741458
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 581aa    MW: 66490 Da    PI: 8.0967
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676741458genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.52.4e-3041125187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW++ e+laL+++r+em++++r++ lk+plWee+s+km+e g++rs+k+Ckek+en+ k++k++keg+ ++++++  t+++f++lea
  676741458  41 RWPRPETLALLRIRSEMDKSFRDSTLKAPLWEEISRKMMELGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFEELEA 125
                8********************************************************************975544..6******985 PP
2trihelix108.83.5e-34403488187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k ev aLi++r+++e +++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  676741458 403 RWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFHQLEA 488
                8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.06938100IPR001005SANT/Myb domain
PfamPF138372.0E-2040125No hitNo description
CDDcd122039.33E-2540105No hitNo description
PROSITE profilePS500907.0044098IPR017877Myb-like domain
PROSITE profilePS500907.526396460IPR017877Myb-like domain
SMARTSM007179.2E-4400462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-4402459IPR009057Homeodomain-like
PfamPF138377.2E-24402489No hitNo description
CDDcd122035.11E-26402467No hitNo description
SuperFamilySSF466896.37E-5403496IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MSGNSSGLLD SSGGGVGGSV EEEKDMKMEE TGEVGGGGGN RWPRPETLAL LRIRSEMDKS  60
FRDSTLKAPL WEEISRKMME LGYKRSAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF  120
EELEAFETLN SYPPEPESQP AKSPPATMTA TPTATVTTSL IPWISSNNPS TEKTSSPLKH  180
HHHQVSVKPI PTNPTFLAKQ PSPFPFYSNN HTTTVDTGFK STSNDLVNNV SSLNLFSSST  240
SSSTASDEDE DHHQEKRSRK KRKYWKGLFT KLTKELMEKQ EKMQKRFLET LENRERERIS  300
REEAWRVQEV ARINREHETL VHERSNAAAK DAAIISFLHK ISGGQQQPQQ QPQQNHKASQ  360
RKQYQSEHSI TFESKEPRPV LLGTTMKMGN YDGNNSVSPS SSRWPKTEVE ALIRIRKNLE  420
ANYQENGTKG PLWEEISAGM RRLGYNRSAK RCKEKWENIN KYFKKVKESN KKRPLDSKTC  480
PYFHQLEALY NERNKNGALP ILPLMVTPQR QLLLPQETQT EFETDRRDKV GNKEGEVEGE  540
SEEDDYEDEE EEGEGDNETS DYEIVLNKTS SPMDINNNLF N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18391KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676741458
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0871170.0AY087117.1 Arabidopsis thaliana clone 3190 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177815.10.0Duplicated homeodomain-like superfamily protein
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A087HJ000.0A0A087HJ00_ARAAL; Uncharacterized protein
STRINGA0A087HJ000.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.20.0Trihelix family protein