PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676740532
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 493aa    MW: 55821.8 Da    PI: 6.8514
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676740532genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.22.1e-20126223199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f+ + +++++l ++rl l+k+f      +++++ ++ l +e+gr+W++ l+ + +sg +++++GW +F++angL +gD++ Fkl++ s++++v+ ++++
  676740532 126 FLRARVTPYSLIKDRLDLSKDFQVMSFDEHNKPCEIHLANENGRKWTLILSRNISSGVFYIRRGWVNFCSANGLSQGDVCNFKLSD-SGERPVLLLCSR 223
                667788999*************7666445556779***************99999999*************************976.889999999987 PP
2B365.57.7e-21270367199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f+++ ++++ +k+g+l+++  f++e g+kk  s ++tl +++gr+W  +l+++++ g+  ++++kGW+e++kang+k++D+++++l++ +++++ +k+++
  676740532 270 FLTIKLTPNRFKTGQLYISSVFMSESGIKK--SGEITLLNKDGRKWPSYLQMTGQCGSewFYMRKGWREMCKANGVKVNDSFMLELVW-EDENPILKFYS 366
                67788899*****************99985..458***************9966655556***************************9.77778888876 PP

                S CS
         B3  99 k 99 
                k
  676740532 367 K 367
                5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.312126223IPR003340B3 DNA binding domain
SMARTSM010191.3E-22126224IPR003340B3 DNA binding domain
PfamPF023621.1E-17126223IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-18128225IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-16129222IPR015300DNA-binding pseudobarrel domain
CDDcd100179.37E-18136222No hitNo description
Gene3DG3DSA:2.40.330.106.6E-18265365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-17268367IPR015300DNA-binding pseudobarrel domain
CDDcd100175.29E-15269366No hitNo description
PROSITE profilePS5086312.605270368IPR003340B3 DNA binding domain
SMARTSM010192.2E-26270368IPR003340B3 DNA binding domain
PfamPF023627.5E-22270367IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MTIPPKSSLF HWRFLTGEKP LLTLDDEFLR NHTKVLLISN ASNRIWKVKL DDNRLAGGWE  60
EFAAHASPSF TDTDDTEVDD DYSESDEYDD VEGEDTDEDV HNDSRDILVK KNKKPEADSS  120
SGYSCFLRAR VTPYSLIKDR LDLSKDFQVM SFDEHNKPCE IHLANENGRK WTLILSRNIS  180
SGVFYIRRGW VNFCSANGLS QGDVCNFKLS DSGERPVLLL CSRESGNGHD AEECSEAEAV  240
KIRSVGGCSK EKSTLDEVSK GKEKNTPSKF LTIKLTPNRF KTGQLYISSV FMSESGIKKS  300
GEITLLNKDG RKWPSYLQMT GQCGSEWFYM RKGWREMCKA NGVKVNDSFM LELVWEDENP  360
ILKFYSKIEN EEKGNRATRK KRACETALYA RTVEKIPGVE LDGRKVSKRG RTGVSNRVNT  420
NSRTLQRTQP EPCSVSDQVA NVKRSILDTL NSVRQFRAEL ETREKNLEAS LLEVSALGEK  480
ILGISQILNN NLV
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00602PBMTransfer from AT4G31610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676740532
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0517723e-96AF051772.1 Brassica oleracea var. botrytis reproductive meristem gene 1 (REM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412578.10.0B3 domain-containing protein REM1
SwissprotQ84J391e-174REM1_ARATH; B3 domain-containing protein REM1
TrEMBLV4P3P10.0V4P3P1_EUTSA; Uncharacterized protein
STRINGXP_006412578.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-151B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]