PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G31610.1 | ||||||||
Common Name | ATREM1, F28M20.200, REM1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 517aa MW: 58388.1 Da PI: 5.4446 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38 | 3e-12 | 33 | 90 | 34 | 98 |
SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 34 ktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ l++ s ++W+vkl ++++ l++GW+eF+ +++ ++gD++vFk++g++ f +v v++ AT4G31610.1 33 TKVLLKSdASDKVWKVKL--DGGR----LSEGWEEFACDQKFRDGDVLVFKHHGDEVF--HVAVVS 90 34556554899*******..9998....***********************9999999..887765 PP | |||||||
2 | B3 | 63 | 4.6e-20 | 162 | 257 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+++ ++ ++l ++rl l+++f+ + g++k++ ++ + de+gr+W++kl + +sg ++++ GW +F+ angL +gD + Fkl ++ e+++v+ ++ AT4G31610.1 162 FITARVTRYSLLHDRLDLSRNFTLLFgGHQKTC--EIDVVDEQGRRWTMKLAKNISSGVFYIRLGWGNFCCANGLTQGDLCKFKLFQN-EERPVLWLC 256 77889999**************98885555444..89999***********99999999*************************9985.555777777 PP - CS B3 98 r 98 AT4G31610.1 257 P 257 5 PP | |||||||
3 | B3 | 65.2 | 9.6e-21 | 285 | 385 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+ v +++ ++g+l+lp +f+++++++k++ +++l +++gr+W+ +l++ +s++++l++GW+e+++ang+ ++D++ ++l++ ++++++ AT4G31610.1 285 FLIVKYTPSRETTGQLSLPVSFTRNNSINKTG--EVILLNQDGRKWSSYLQItglgrGAGSEWFYLRRGWREMCEANGVGVNDSFKLELVW-EGANPM 379 55667789999999************999777..8***************9989986666677****************************.9999** PP EEEE-S CS B3 94 vkvfrk 99 +k+++k AT4G31610.1 380 FKFCSK 385 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.45E-8 | 5 | 88 | No hit | No description |
PROSITE profile | PS50863 | 11.068 | 7 | 92 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-15 | 10 | 92 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-11 | 21 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-12 | 31 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-16 | 156 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.8E-18 | 162 | 257 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.06E-18 | 162 | 257 | No hit | No description |
SMART | SM01019 | 9.3E-25 | 162 | 259 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-18 | 162 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.408 | 162 | 259 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-17 | 279 | 385 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-18 | 282 | 390 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.31E-15 | 284 | 384 | No hit | No description |
Pfam | PF02362 | 3.8E-22 | 285 | 385 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-27 | 285 | 386 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.449 | 285 | 385 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MADPPHFSLF QQKFRTGDKP FLTLDADFLM NHTKVLLKSD ASDKVWKVKL DGGRLSEGWE 60 EFACDQKFRD GDVLVFKHHG DEVFHVAVVS PSVSGDIRNA SSSQVITEDT YIDVDDVDDD 120 DYGQDDEDDD DDDDEGEDNI ENISEKTDKR QEADSSSDHS GFITARVTRY SLLHDRLDLS 180 RNFTLLFGGH QKTCEIDVVD EQGRRWTMKL AKNISSGVFY IRLGWGNFCC ANGLTQGDLC 240 KFKLFQNEER PVLWLCPQES GNGRKEKRTF DEVSKGKEKK TPSPFLIVKY TPSRETTGQL 300 SLPVSFTRNN SINKTGEVIL LNQDGRKWSS YLQITGLGRG AGSEWFYLRR GWREMCEANG 360 VGVNDSFKLE LVWEGANPMF KFCSKIENHE YKGKGNQRTR KKRACETAPQ PRNVKKTPRL 420 GVEGPVYQVD EERGHTQVSN RTNTISGNLQ RLLPPSCSVS DQVANVKQGI VDSLNTVRQC 480 RTELETSEQN LQASLLAIDA LGERIWGISK ILSSNLV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.19035 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 253488_at | 0.0 | ||||
Expression Atlas | AT4G31610 | - | ||||
AtGenExpress | AT4G31610 | - | ||||
ATTED-II | AT4G31610 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Not expressed in stage 1 flower. In stage 2 and 3 flowers, expressed in the central area of the floral dome, but not in the sepal anlagen. In stage 5 flower, restricted to the carpel anlagen. Stage 6, 7 and 8 flowers, expressed in the medial ridge. In stage 9 flower, expressed in the septum, style, and stigma. Shortly before anthesis expressed in the stigma and septum. {ECO:0000269|PubMed:11842146}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM), in the inflorescence apex and flowers. {ECO:0000269|PubMed:11842146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins | |||||
UniProt | May play a role in flower development. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00602 | PBM | 24477691 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G31610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G31610 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT003891 | 0.0 | BT003891.1 Arabidopsis thaliana clone RAFL15-10-H22 (R20619) unknown protein (At4g31610) mRNA, complete cds. | |||
GenBank | BT005002 | 0.0 | BT005002.1 Arabidopsis thaliana clone U20619 unknown protein (At4g31610) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_567880.1 | 0.0 | Transcriptional factor B3 family protein | ||||
Swissprot | Q84J39 | 0.0 | REM1_ARATH; B3 domain-containing protein REM1 | ||||
TrEMBL | A0A178UW35 | 0.0 | A0A178UW35_ARATH; REM1 | ||||
STRING | AT4G31610.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9950 | 17 | 36 | Representative plant | OGRP2682 | 2 | 31 |
Link Out ? help Back to Top | |
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Phytozome | AT4G31610.1 |
Entrez Gene | 829288 |
iHOP | AT4G31610 |
wikigenes | AT4G31610 |
Publications ? help Back to Top | |||
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