PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676739340
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 274aa    MW: 31974.7 Da    PI: 9.0615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676739340genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00037100123123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                +kC++C+ksF+    L +H  + H
  676739340 100 WKCGYCKKSFNEEQFLDQHFASrH 123
                58***********99999987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.974100125IPR007087Zinc finger, C2H2
PROSITE patternPS000280102123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRPKESIPV VLLLFALLLH QSLSQVLEES ESTRSVNGNA QEIHCSRQRS RAAWQIIQDY  60
LTPFVEREGY KIPNKCRLHP DNDLYRDQEQ HKIYVDIYEW KCGYCKKSFN EEQFLDQHFA  120
SRHSNLLNTS IANSCFPVSQ GPSASRLHEH FLRQFCDAHT CTGKNKPFPR GGKKKSGVFY  180
LAISILTLML LPLFYLLRKE NRDTTVASDY KNREKNKTVV RCELQIVLTV SPPQSFPYFL  240
KSDTCGFETI VLFWEVSCYG YQRHMILSYK KMNR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676739340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0639592e-78AY063959.1 Arabidopsis thaliana unknown protein (At5g63280) mRNA, complete cds.
GenBankAY0846832e-78AY084683.1 Arabidopsis thaliana clone 114951 mRNA, complete sequence.
GenBankAY1338532e-78AY133853.1 Arabidopsis thaliana clone U11672 unknown protein (At5g63280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871758.11e-103uncharacterized protein LOC9302618
RefseqXP_020871759.11e-103uncharacterized protein LOC9302618
TrEMBLD7MNZ81e-102D7MNZ8_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.8__2327__AT5G63280.11e-102(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43711618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.12e-90C2H2-like zinc finger protein