PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676738414
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 652aa    MW: 74914 Da    PI: 10.1924
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676738414genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind27.11.1e-08531616295
                   HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                   F +++ ++++d++++++isws  +n+++f++ ++ee+ ++ +   F  + f  F+ +L+ Y    +k ++++        eF +k+F +g+ ell 
     676738414 531 FHERVCKLVDDPSTDSIISWSksSNSKTFIIRKPEELVHRKMLFKFYSDMFPEFISKLKFYK---LKGSRGR-------LEFGNKNFVRGHPELLP 616
                   778899**************9766679**********9999999999***********9885...5566666.......89999999999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014471.96E-598226No hitNo description
PfamPF046462.1E-111245498IPR006740Protein of unknown function DUF604
SMARTSM004154.7E-6527621IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.9E-12528615IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.43E-12529617IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-8531617IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MKSNNHQKDS SEKLIWDRIL SGPGSPTRPV SKLMVLLLLL VSATYVVYTL KLISNSRACH  60
VEPFSAVVRR LNDMVNSSQP LILFHSNQTA VIESHNSPPP PPPPPPPETN LRHVVFGIAA  120
SARLWKQRKE YIKIWYKPNQ MRGYVWLEKP VKKLDEDDDE TNLPPVRISG DTSKFPYKNK  180
QGHRSAIRIS RIVTETLKLG LKDVRWFVMG DDDTVFVAEN LIRVLRKYDH NQMYYIGSLS  240
ESHLQNIYFS YGMAYGGGGF AISYPLAVAL SKMQDRCIKR YPALYGSDDR MQACMAELGV  300
PLTKELGFHQ YDVYGNLFGL LAAHPVAPLV TLHHLDVVEP IFPNVTRVDA LKRLQVPAML  360
DSAGLMQQSI CYDKRRKWTV SVSWGFAVQI FRGVFSAREM EMPSRTFLNW YRRADYTAYA  420
FNTRPVSRHP CQKPFVFYMT TAGVHPMTNM TVSRYESHRV AQPGCRWKMA NPGDLRTVIV  480
YKKPDPHLWD RSPRRNCCRV KSKKNNTLEI SVAVCKEGMA YLDYIKGIMM FHERVCKLVD  540
DPSTDSIISW SKSSNSKTFI IRKPEELVHR KMLFKFYSDM FPEFISKLKF YKLKGSRGRL  600
EFGNKNFVRG HPELLPAMFI EAVIDRRRVR AKAKAEAEAK AQVKDGLENL RI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372377DKRRKW
Cis-element ? help Back to Top
SourceLink
PlantRegMap676738414
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405352.10.0uncharacterized protein LOC18022951
TrEMBLV4L8Q90.0V4L8Q9_EUTSA; Uncharacterized protein
STRINGXP_006405352.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.13e-09HSF family protein