PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT4G19630.1

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HSF

Protein Properties

Length: 131aa MW: 15222.7 Da PI: 10.2933

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT4G19630.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	52.3	1.6e-16	12	104	2	100
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HH.HHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvldee.efakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 F +y+++ed++ + +isws+++n fv+++ee ++ +k+L F +++ F+ L+ YgF++vk++++ +eF+++ F +g+ e l+++ AT4G19630.1 12 FYIGIYKLVEDPSSDPIISWSKSNNGFVMCNEEaRIRSKILL-RFNCGKLSEFLSELKYYGFTRVKKTDSG------KMEFRNEDFVRGQPERLRDM 101 77889***********************965167777776.59******************9988......79**********999987 PP XXX CS HSF_DNA-bind 98 krk 100 k AT4G19630.1 102 MLK 104 654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.2E-33	8	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.18E-21	8	101	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.9E-19	9	98	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.3E-16	12	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.8E-6	12	35	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.8E-6	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MGQNFPNGLG TFYIGIYKLV EDPSSDPIIS WSKSNNGFVM CNEEARIRSK ILLRFNCGKL 60 SEFLSELKYY GFTRVKKTDS GKMEFRNEDF VRGQPERLRD MMLKACRKHR AKFKAKEAAK 120 EAAKELQRLQ I

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AT4G19630
AtGenExpress	AT4G19630

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT4G19630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT4G19630

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY133704	0.0	AY133704.1 Arabidopsis thaliana clone C103282 unknown protein (At4g19630) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_193698.2	6e-94	winged-helix DNA-binding transcription factor family protein
TrEMBL	Q8L7H2	1e-92	Q8L7H2_ARATH; Winged-helix DNA-binding transcription factor family protein
STRING	AT4G19630.1	2e-93	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5067	14	50

Link Out ? help Back to Top
Phytozome	AT4G19630.1
Entrez Gene	827705
iHOP	AT4G19630
wikigenes	AT4G19630

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137]