PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676736916
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 312aa    MW: 35320.9 Da    PI: 9.8021
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676736916genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.58.5e-2469148285
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                Wt++e+l+Lie ++e++++++rg lk ++Wee++ ++ ++ g+ers++qC++k+e+l+kr+++++++++       s +p+++q+
  676736916  69 WTQDETLLLIESYKEKWHAIGRGPLKSNHWEEIAVAVsARSGVERSATQCRHKIEKLRKRFRAERQSMGPI-----SIWPFYSQM 148
                ***********************************998899****************************84.....68*****99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00465128IPR001005SANT/Myb domain
PROSITE profilePS500906.74869126IPR017877Myb-like domain
PfamPF138378.6E-2069150No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MATPSPTSSP PSDSNPNSAA TPPQQNQPPS TSTTITTTTI QTQPPPPTTV VALAASTSAV  60
ARKTQPVLWT QDETLLLIES YKEKWHAIGR GPLKSNHWEE IAVAVSARSG VERSATQCRH  120
KIEKLRKRFR AERQSMGPIS IWPFYSQMVE LDSNPAPISA RPLTRLPPHH CQEDQEEEEE  180
EEEEEEDYEE EDERQNKNKS RSINHILRRP GTVNRFAGVG GGLLQWGQKE RSKRKRKEDG  240
GGEMIRRKKG ARAVASEIRA FAERVMVMEK KKIEFAKETV KLRKEMEIKR LKLIQSSQAQ  300
LLQFLNTAFD SF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234248KRKEDGGGEMIRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676736916
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486618.11e-151PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A1J3CS391e-154A0A1J3CS39_NOCCA; Trihelix transcription factor ASIL2 (Fragment)
TrEMBLA0A1J3IPX01e-154A0A1J3IPX0_NOCCA; Trihelix transcription factor ASIL2 (Fragment)
STRINGA0A087HCF31e-153(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-133Trihelix family protein