PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676735696
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 274aa    MW: 30457.4 Da    PI: 7.4992
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676735696genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.74.9e-28164224259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                dD ++WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp ++ +tY+g+H+++
  676735696 164 DDNHTWRKYGQKEILGSKFPRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVTYRGSHTCH 224
                8****************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-27161224IPR003657WRKY domain
SuperFamilySSF1182902.09E-25162225IPR003657WRKY domain
SMARTSM007749.1E-37163225IPR003657WRKY domain
PROSITE profilePS5081120.243164226IPR003657WRKY domain
PfamPF031061.1E-25164224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEEVMSFMFH GLKLVKELES SLPGKSPEAL STSLDEISKT FGDANERLKI VLEIRNSETA  60
LSQVKSVTAS CSDQMLMQIE PGMMQEYWLR CSGSTSSQGI EAMTQRQLMA VDGDGGRYLT  120
ATERSGGSGS GSSTPRQRRR KNEREEQTVL VAALRMGNID LPPDDNHTWR KYGQKEILGS  180
KFPRAYYRCT HQKLYNCPAK KQVQRLNDDP FTFRVTYRGS HTCHIYSTAP TASAAAPTDP  240
ITTTAATGHP VDYGPPFFDM ADAMMFGDPK SFQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-21164223968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676735696
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482000.11e-157PREDICTED: WRKY transcription factor 55-like
SwissprotQ9SHB51e-145WRK55_ARATH; WRKY transcription factor 55
TrEMBLD7LFT81e-151D7LFT8_ARALL; WRKY DNA-binding protein 55
STRINGfgenesh1_pm.C_scaffold_40018171e-152(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-124WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]