PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676735616
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 397aa    MW: 44808.9 Da    PI: 4.6419
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676735616genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-18111162156
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                ++++GVr++  +g+WvAeIr+p   g +  r +lg+f t +eAa a+++a+k+++g+
  676735616 111 CHFRGVRQRT-WGKWVAEIREP---G-HgSRLWLGTFPTSYEAALAYDEAAKAMYGH 162
                689****999.**********8...4.36*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-14111162IPR001471AP2/ERF domain
CDDcd000181.75E-29111170No hitNo description
SMARTSM003801.4E-35112175IPR001471AP2/ERF domain
PROSITE profilePS5103220.429112169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-28112170IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-19112170IPR016177DNA-binding domain
PRINTSPR003678.5E-9113124IPR001471AP2/ERF domain
PRINTSPR003678.5E-9135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDQSQSILIR REWHKRNYVE TVRSIGIIVS FASSFRVLSY MPSKIVDRKR KSRDGATSVA  60
ETLKKWREYN EQTEAASCND DDGLKPIRRA PPKGSRKGRM KGKGGPENRI CHFRGVRQRT  120
WGKWVAEIRE PGHGSRLWLG TFPTSYEAAL AYDEAAKAMY GHLARLNLPD ISNGSSSTVA  180
TVSGSVTTLS DESEVCALED THVRSGSCQV NLEDEYIPLN SSQCIKEELE VKEEVGIPVE  240
NSQRIKEEPE TEEEMRELNS ADTFGIGLDP KKETLDEWLM GNGTEHEPWN FGVDEVFDVD  300
EVLGLLGEVN VSGQETMQGQ VDRPLYLTYQ KQFPDANLLG SLNHTEIAHP GVDFGYPIAQ  360
ASEMENISMD LDRRKFEDLD IKNMDFEGRD KDDHDEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-17112169260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676735616
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881716.11e-159dehydration-responsive element-binding protein 2C isoform X1
SwissprotQ8LFR21e-155DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLD7LF311e-157D7LF31_ARALL; Uncharacterized protein
STRINGBostr.23794s0027.1.p1e-164(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-110ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]