PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676735176 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | LBD | ||||||||
Protein Properties | Length: 163aa MW: 18168.9 Da PI: 8.235 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.6 | 1e-38 | 18 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC+++Cv+apyf aeq +++fa+vhk+FGasn +k+l +lp ++r da+++l+yeA ar++dPvyG+vg++++lq+q+++l+ae+a++++ 676735176 18 PCGACKFLRRKCVRGCVFAPYFDAEQgAARFAAVHKVFGASNASKMLLRLPFHRRLDAVATLCYEALARLHDPVYGSVGHLFSLQHQVMNLQAEIAHVQA 117 7***********************9989********************************************************************9997 PP DUF260 100 e 100 + 676735176 118 R 118 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.8 | 17 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-37 | 18 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MMTGNMNGDR RGGGGGGPCG ACKFLRRKCV RGCVFAPYFD AEQGAARFAA VHKVFGASNA 60 SKMLLRLPFH RRLDAVATLC YEALARLHDP VYGSVGHLFS LQHQVMNLQA EIAHVQARLS 120 TFQFFSLISP QQMLQPPFDL THNNEYPMEP PTNLDFVWED QLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-37 | 14 | 116 | 7 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-37 | 14 | 116 | 7 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676735176 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189498 | 1e-108 | AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018436454.1 | 6e-92 | PREDICTED: LOB domain-containing protein 19-like | ||||
Refseq | XP_018436455.1 | 6e-92 | PREDICTED: LOB domain-containing protein 19-like | ||||
Swissprot | O22132 | 2e-80 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | A0A087H5D2 | 1e-82 | A0A087H5D2_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H5D2 | 2e-83 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 2e-83 | LOB domain-containing protein 19 |