PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676735110
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 333aa    MW: 37837.9 Da    PI: 6.399
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676735110genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004527123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ykC  C ksF +   L  H+r+H
  676735110  5 YKCRFCFKSFINGRALGGHMRSH 27
               9*********************9 PP
2zf-C2H215.35.7e-05207229123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC+ Cgk+F++   L  H  +H
  676735110 207 FKCETCGKVFKSYQALGGHRASH 229
                89***********9999998887 PP
3zf-C2H212.50.00045256278123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp+C ++F++   L  H r+H
  676735110 256 HQCPICFRVFTSGQALGGHKRSH 278
                79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.2E-4227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.0E-4428IPR007087Zinc finger, C2H2
SuperFamilySSF576673.71E-9427No hitNo description
PROSITE profilePS501579.93527IPR007087Zinc finger, C2H2
SMARTSM003550.036527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576673.71E-9202229No hitNo description
PfamPF139122.1E-11206231IPR007087Zinc finger, C2H2
SMARTSM003550.013207229IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.676207234IPR007087Zinc finger, C2H2
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
SuperFamilySSF576673.38E-5251280No hitNo description
PfamPF139123.7E-10256278IPR007087Zinc finger, C2H2
SMARTSM003550.08256278IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349256283IPR007087Zinc finger, C2H2
PROSITE patternPS000280258278IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEERYKCRFC FKSFINGRAL GGHMRSHMLS LSTKRELYGI EVEEEERPSQ LSDDVTESDA  60
SSSSDEFDHT ESNRLQMVDD DDKEMEFDDV ESETESSRIN NPTQRRSKRT RKLGSFDFDF  120
KKLKKNQHGE SVKEPEHHSS ASDTTTEEDL AFCLIMLSRD KWKQHNKKKK KTVVVEEEGD  180
ETDHECEDHR LSKNRGGGGG GGGRGRFKCE TCGKVFKSYQ ALGGHRASHK KNKTCSTMTL  240
STKTEFENGV TEKKIHQCPI CFRVFTSGQA LGGHKRSHGS SNLGSGRGVL SVNQLVRIVK  300
EEEEEVLVKQ RMIDLNLPAP NEDDETSVVF DEW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194203RGGGGGGGGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676735110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010812.11e-146zinc finger protein ZAT4
SwissprotQ9SHD01e-131ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLV4N1Y91e-145V4N1Y9_EUTSA; Uncharacterized protein
STRINGBostr.25993s0262.1.p1e-152(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-110C2H2-like zinc finger protein