PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676735094
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 260aa    MW: 28816.1 Da    PI: 8.2977
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676735094genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.5e-18175209135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  676735094 175 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 209
                *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.7E-902259IPR016679Transcription factor, GATA, plant
SMARTSM004012.7E-15169219IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-13173207IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.227173205IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.71E-14173233No hitNo description
CDDcd002027.94E-14174221No hitNo description
PfamPF003207.2E-16175209IPR000679Zinc finger, GATA-type
PROSITE patternPS003440175200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDVYGLSSPD LLRIDDLLDF SNEDIFSASS STSTGPNSSS SFPPPQNPSF HHHHHHHLPS  60
SADHSFLHDI CVPSDDAAHL EWLSQFVDDS FADFPANPLG GTTMTSVKTE TSFPGKPRSK  120
RSRAPAAFAG TWTPMAESDQ QLHVAGKLKP KKEQSGGGGR HQSMTETAEG GLRRCTHCAS  180
EKTPQWRTGP LGPKTLCNAC GVRFKSGRLV PEYRPASSPT FVLTQHSNSH RKVMELRRQK  240
EVMRQPQQVQ LHHHHHHQPF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676735094
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935900.0AB493590.1 Arabidopsis thaliana At2g45050 mRNA for hypothetical protein, partial cds, clone: RAAt2g45050.
GenBankAK3171340.0AK317134.1 Arabidopsis thaliana AT2G45050 mRNA, complete cds, clone: RAFL21-72-C19.
GenBankBT0009210.0BT000921.1 Arabidopsis thaliana clone C105099 putative GATA-type zinc finger transcription factor (At2g45050) mRNA, complete cds.
GenBankY136490.0Y13649.1 Arabidopsis thaliana mRNA for GATA transcription factor 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397685.11e-153GATA transcription factor 2
SwissprotO497411e-133GATA2_ARATH; GATA transcription factor 2
TrEMBLV4LH941e-152V4LH94_EUTSA; GATA transcription factor
STRINGXP_006397685.11e-153(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-113GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]