PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734790
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 347aa    MW: 39505.4 Da    PI: 6.5258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734790genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12169219154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +r++h ++Er+RR+++N  ++ Lr+l+P++   +  + + a+i+  A++++k L
  676734790 169 QRMTHIAVERNRRRQMNVHLNSLRSLIPSS---YILRGDQASIVGGAIDFVKIL 219
                79****************************...9***************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.22E-14160229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-12167224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.24E-10167224No hitNo description
PROSITE profilePS5088814.31168219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-9174225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSPEWVAFNA VDSLDQKVIV RRSFEVQGSA EDQSLALEED TRIPFLQMLQ QSGEDPSSVL  60
SFKDPNFLAL LSLQTLEKPW ELGKNNLPHE VPEFHSPIDS ETYYHYQNPS LEGISEAISR  120
QELQLNQVEN ASSRRKRRNN NLPTASMSRE KRKRRRTKPT KNTEEMESQR MTHIAVERNR  180
RRQMNVHLNS LRSLIPSSYI LRGDQASIVG GAIDFVKILE QHLQSLEAQK ITKQTDGEDS  240
NNLREVSSNE LRGSGTSTNE EETSKLRIDA TVIESHVNLK IQCPRKQGQL LRSIILLEKL  300
RFTVLHLNIT SPCNASVSYS FNLKMEEECS LGSADEIMAA VRQIFDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135155KRRNNNLPTASMSREKRKRRR
2150155KRKRRR
3151155RKRRR
4151156RKRRRT
5151158RKRRRTKP
6169180RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676734790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001324835.11e-165basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotO810371e-166BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A384KPF21e-164A0A384KPF2_ARATH; Uncharacterized protein
TrEMBLI2FGF61e-164I2FGF6_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGBostr.25993s0085.1.p1e-180(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-155bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]