PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676734722 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 575aa MW: 63708.1 Da PI: 5.6694 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.7 | 5.1e-14 | 402 | 448 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ + K++Ka+ L A+ YIk+Lq 676734722 402 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAISYIKELQ 448 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.4E-51 | 48 | 239 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 5.76E-19 | 397 | 462 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.936 | 398 | 447 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.29E-15 | 401 | 451 | No hit | No description |
Pfam | PF00010 | 1.9E-11 | 402 | 448 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-18 | 402 | 465 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-18 | 404 | 453 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MNTSDLEWDD EEKSVVSAVL GNLASDFLRA NSNSNQNLFL VMGSDDGLNE KLSRLVDWPN 60 SENFSWNYAI FWQQTMSRSG HQVLGWGDGC CREPNEQEES KVVSVYNCNS LGLEEERWQD 120 MRKRVLQKLH RLFGGSDEDN YALSLEKVTA TEIFFLASMY FFFNHGEGGP GSCYASGKHV 180 WLFDAVNSAS DYCFRSFMAK SAGIRTIVMV PTDAGVLELG SVWSLPENIE LVKSVQAMFT 240 RRAKPPLMVN STNTNVNGGG IHKLFGQDLN NSDHGAHHLA KKLDERNLNE RFTPQSWQGY 300 NSNNKASTFG YTSQGIDVKL QENASVVVDD NSYKMKTELA GSSVAASSIP STNTQLEKSD 360 SCAEKRPASV LAGGAGTASV VEEKRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA 420 LRSVVPNISK MDKASLLGDA ISYIKELQEK VNTIEAERVR TESSLSESNQ MTTRSVESPE 480 VDIQAGNEEV VVRVISPLDS HPASVVIQAM RNSEVTLMES KLSLAEDTLI HSFVIKSNHG 540 SDPLTKEKLI AAAYPQTSSM QHPLPSSSSQ VSNDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 9e-30 | 396 | 467 | 2 | 73 | Transcription factor MYC2 |
5gnj_B | 9e-30 | 396 | 467 | 2 | 73 | Transcription factor MYC2 |
5gnj_E | 9e-30 | 396 | 467 | 2 | 73 | Transcription factor MYC2 |
5gnj_F | 9e-30 | 396 | 467 | 2 | 73 | Transcription factor MYC2 |
5gnj_G | 9e-30 | 396 | 467 | 2 | 73 | Transcription factor MYC2 |
5gnj_I | 9e-30 | 396 | 467 | 2 | 73 | Transcription factor MYC2 |
5gnj_M | 9e-30 | 396 | 467 | 2 | 73 | Transcription factor MYC2 |
5gnj_N | 9e-30 | 396 | 467 | 2 | 73 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 383 | 391 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00101 | PBM | Transfer from AT2G46510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676734722 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006397843.1 | 0.0 | transcription factor ABA-INDUCIBLE bHLH-TYPE | ||||
Swissprot | Q9ZPY8 | 0.0 | AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE | ||||
TrEMBL | V4N299 | 0.0 | V4N299_EUTSA; Uncharacterized protein | ||||
STRING | XP_006397843.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3758 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46510.1 | 0.0 | ABA-inducible BHLH-type transcription factor |
Publications ? help Back to Top | |||
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