PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676733684

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

WRKY

Protein Properties

Length: 331aa MW: 36741.8 Da PI: 9.6871

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676733684	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	8e-31	264	321	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeHnh+ 676733684 264 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCIDETSMLIVTYEGEHNHS 321 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.8E-15	227	260	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	5.1E-33	250	321	IPR003657	WRKY domain
PROSITE profile	PS50811	29.356	257	323	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-26	260	321	IPR003657	WRKY domain
SMART	SM00774	4.6E-37	262	322	IPR003657	WRKY domain
Pfam	PF03106	1.4E-26	264	320	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEEVEAASKL AIESCHGVLN LLSQQQTSDS KSIVVETREA VSKFKRVASL LAVGSGHGKF 60 RRINNKFRPT FPQHIFLESP ICCGNDASND YTQVLAPEPL QMVPASVAYD EIDPRHQLGH 120 PPLMLGHKMC VEKSFLELKP PSFRAPYQLI HNHQQIAYSR SNSGVNLKFD GSGSSCYTPS 180 VSNGSRSFVS SLSMDASVAD YDRSSFHLTG LSRGSDQISR KMCSGSLKCG SRSKCHCSKK 240 RKLRVKRSIK VPAISNKIAD IPPDEYSWRK YGQKPIKGSP HPRGYYKCSS VRGCPARKHV 300 ERCIDETSML IVTYEGEHNH SRILTSQSAH T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	255	320	7	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676733684

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353314	0.0	AK353314.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-G13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006408166.1	0.0	probable WRKY transcription factor 39
Swissprot	Q9SR07	0.0	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A087H6X8	0.0	A0A087H6X8_ARAAL; Uncharacterized protein
STRING	A0A087H6X8	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	0.0	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]