PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676733448
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 314aa    MW: 36301.6 Da    PI: 6.3943
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676733448genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.7e-081862241154
                HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                rRR+++ +++  L +l+P+      kK+s a+iLe++ +YI  L
  676733448 186 RRRRKVSDKIRSLEKLMPWE-----KKMSLATILEETHKYITFL 224
                8******************9.....8***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.582175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-8186233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-8186231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-5186224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-4186229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MESGGYEFES LSELPPLPQV YDPMEYSRSY PYSITPLDSL PPFPHSDFTP YDSFTFLDTN  60
LQQPVSDSFF LDSSLSLVTR DYLTESTQLE KQQQQQQQQH LFSSHDVVPT PFLRLPDLRS  120
FEHTTTVEEE EEEDTKQQQQ PPLLSLALAP PLPRHHRRVN KTTTISPPSS SSPIQSSSSS  180
SSQSLRRRRK VSDKIRSLEK LMPWEKKMSL ATILEETHKY ITFLHSQIAS LRWMPLESVY  240
PTNKQEEGQE EETKTNHHHH HKHPLLNSLT RQQILQVIAN SPGSRNVLYT RGLCLFSYEQ  300
LFSVKMMADS TRNL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676733448
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145434.12e-97PREDICTED: transcription factor bHLH117
SwissprotQ9LRJ41e-69BH117_ARATH; Transcription factor bHLH117
TrEMBLA0A397ZFA64e-96A0A397ZFA6_BRACM; Uncharacterized protein
TrEMBLM4ERA15e-96M4ERA1_BRARP; Uncharacterized protein
STRINGBra031324.1-P8e-97(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.12e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]