PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676733166
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TCP
Protein Properties Length: 358aa    MW: 40606.5 Da    PI: 8.2035
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676733166genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP137.41.2e-421082343135
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa.kskksq 101
                +k+drhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k++ik+  ++  +++s          +++++ ++++k+++ k ++++
  676733166 108 KKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLISNSKASIKKVKES--IDESGG-----GGDDEHPQVNEKEKDETlKVSRKR 200
                699************************************************************..333222.....222333444466666666999999 PP

        TCP 102 ksaasalnlakesrakarararertrekmriknk 135
                +++ +++ ++kesr+kar+rar rt  km+++ +
  676733166 201 TKTVENSCKKKESREKARERARVRTMTKMKMRLS 234
                99998999999********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-34108170IPR005333Transcription factor, TCP
PROSITE profilePS5136935.363109167IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.138211228IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MFPSIDTNGY DLFDPFNPHQ ATMLPSFTTD IQSPSSYHHH PLPSFPFSSD FLDESVLIGQ  60
FLLQQQDAAT NVVDSPRKLC KKLEEEKKNE KCVDGPASEK VPRRRTGKKR DRHSKICTAQ  120
GPRDRRMRLS LQIARKFFDL QDMLGFDKAS KTIEWLISNS KASIKKVKES IDESGGGGDD  180
EHPQVNEKEK DETLKVSRKR TKTVENSCKK KESREKARER ARVRTMTKMK MRLSELNDTS  240
KTFSDPNQES RKIKKTGGAE LEEKSPEQER STTNVNMVEY QMDSVSIIEK FLGLTSDSSF  300
SSIFGDSEES YTSLSSIRGT ASAAGMVIPR EHNTTSTTSV DEERNSISSF SLYDYICY
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676733166
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024011986.10.0transcription factor TCP12 isoform X2
SwissprotA0AQW41e-161TCP12_ARATH; Transcription factor TCP12
TrEMBLV4MB030.0V4MB03_EUTSA; Uncharacterized protein
STRINGXP_006391095.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-130TCP domain protein 12