PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676732794
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 311aa    MW: 33177.5 Da    PI: 6.313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676732794genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.7e-09158202554
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  676732794 158 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 202
                99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14151212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14155212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6158202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MASNNNPHEN LSDQTPSDDF FEQILGLPNF SASSAAGLSG VDGGLGGGAP PMMLQLGSGE  60
EGSHMAGLGG SGPTGFHNQM FPLGLSLDQG KGPGFLRPEG GHGTGKRFSD DVVDNRCSSM  120
KPVFHGQPMQ QPAPSAPHQP TSIRPRVRAR RGQATDPHSI AERLRRERIA ERIRALQELV  180
PTVNKTDRAA MIDEIVDYVK FLRLQVKVLS MSRLGGAGAV APLVTDMPLS SSVEDETSDG  240
GRTPQPAWEK WSNDGTERQV AKLMEENVGA AMQLLQSKAL CMMPISLAMA IYHSQPPDTS  300
SVVKPEANPP P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676732794
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527650.0AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396471.10.0transcription factor UNE12
RefseqXP_006396472.10.0transcription factor UNE12
SwissprotO227680.0UNE12_ARATH; Transcription factor UNE12
TrEMBLV4L2M50.0V4L2M5_EUTSA; Uncharacterized protein
STRINGXP_006396471.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.20.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]