PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676732752
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 479aa    MW: 54544 Da    PI: 4.808
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676732752genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.7e-1845132194
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                ffkv+   ++l+s+ + +p ++ +e+      +kt +l+ + g  W+v +  ++ ++++++++GW +Fvk+n L +gDf++F ++g++ fe  +
  676732752  45 FFKVF--ISHLSSDSMLIPISYYDEFPRH--LPKTAILQGTGGCIWKVAM--KQEGEEVFFEQGWPKFVKDNSLVDGDFLTFVYNGDRIFEVSI 132
                89999..89999999********999644..889****************..9999****************************9988885544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-2039138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-2240138IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.59243136IPR003340B3 DNA binding domain
CDDcd100177.54E-1643133No hitNo description
PfamPF023622.2E-1545129IPR003340B3 DNA binding domain
SMARTSM010194.4E-1845136IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-6388472IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-4394474IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MALSLPQALS LLSVPYFTLK YLTFPSHSQF QHSLPMDATD TPPRFFKVFI SHLSSDSMLI  60
PISYYDEFPR HLPKTAILQG TGGCIWKVAM KQEGEEVFFE QGWPKFVKDN SLVDGDFLTF  120
VYNGDRIFEV SIYGLDGCKE ARVVTEVEDG EEASLYSLSS NDTDTRFESE MANTVQRSND  180
KGKSKVEVVD GSDDEEDSVY SLNSKDTDTD TSSEFEMAHT IPRDKNKGKS TEEAVEVESD  240
DKVDSDSLNS EDKEIDNTCS EFNTANTIPR SKNKGKSKEK VVESSGKDTD SDYIEEFGRL  300
DLEEESSSDS SYAPDSDDTA SRVKPKVTNP KKKDFSENSK VIEDKDELGD SSAPVERVKK  360
TREKVKTIIE NPVAYLDNPK NIYFETGVKN RKYELLVHAQ LVKDYCLRFE DYVCYIDPKG  420
KLVAKTAKWK DQRVCIKRWI RICERNNLKK QDRVVCELLR NHDLVYAVKI HIVRAKYLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A9e-204413810104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676732752
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018514821.10.0PREDICTED: B3 domain-containing protein At4g34400 isoform X2
SwissprotQ9SZ051e-121Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLA0A3P6CYY90.0A0A3P6CYY9_BRAOL; Uncharacterized protein (Fragment)
TrEMBLM4DPT90.0M4DPT9_BRARP; Uncharacterized protein
STRINGBra018530.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-105B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]