PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676732396
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 520aa    MW: 57451.7 Da    PI: 9.1886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676732396genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-1273125155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +++ h  +Er+RR ++ s f  Lr+llP       ++K   a+ + +Av+YIk+Lq
  676732396  73 KKMRHRDIERQRRLEVSSLFKSLRSLLPFqY---IQGKRATADHVSQAVNYIKDLQ 125
                6889*************************66...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.59E-1370129No hitNo description
SuperFamilySSF474591.44E-1471147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.04972124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-973125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1173141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-478130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:2.40.40.101.8E-46279419IPR009009RlpA-like protein, double-psi beta-barrel domain
PRINTSPR012254.9E-37293308IPR007118Expansin/Lol pI
SuperFamilySSF506852.69E-51293443IPR009009RlpA-like protein, double-psi beta-barrel domain
PRINTSPR012254.9E-37311329IPR007118Expansin/Lol pI
PROSITE profilePS5084229.221312425IPR007112Expansin/pollen allergen, DPBB domain
PRINTSPR012261.9E-46324338IPR002963Expansin
PfamPF033309.4E-21329415IPR009009RlpA-like protein, double-psi beta-barrel domain
SMARTSM008371.2E-43329415IPR007112Expansin/pollen allergen, DPBB domain
PRINTSPR012254.9E-37333351IPR007118Expansin/Lol pI
PRINTSPR012261.9E-46364374IPR002963Expansin
PRINTSPR012261.9E-46383400IPR002963Expansin
PRINTSPR012261.9E-46400413IPR002963Expansin
PRINTSPR012254.9E-37408424IPR007118Expansin/Lol pI
Gene3DG3DSA:2.60.40.7602.2E-29420519IPR007117Expansin, cellulose-binding-like domain
SuperFamilySSF495901.96E-29422515IPR007117Expansin, cellulose-binding-like domain
PRINTSPR012261.9E-46424436IPR002963Expansin
PfamPF013571.9E-24426504IPR007117Expansin, cellulose-binding-like domain
PROSITE profilePS5084321.315435515IPR007117Expansin, cellulose-binding-like domain
PRINTSPR012261.9E-46436457IPR002963Expansin
PRINTSPR012254.9E-37462476IPR007118Expansin/Lol pI
PRINTSPR012261.9E-46501517IPR002963Expansin
PRINTSPR012254.9E-37501515IPR007118Expansin/Lol pI
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009664Biological Processplant-type cell wall organization
GO:0005576Cellular Componentextracellular region
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDFLPSMFTP DLIDEDGLLF SDSFVLSPLI SCQNHDVCNP IADKNGVSNK KRSFCDTDGK  60
IVANKEGDDR ESKKMRHRDI ERQRRLEVSS LFKSLRSLLP FQYIQGKRAT ADHVSQAVNY  120
IKDLQNKIKK LNEKKNRLKN SIPGTVTAHP TTEECTSCLS SSSLSTLSSR CSCVDDKHIM  180
VKVMPCFVGI EIIISCCLGR SKSCLSSVLQ ILAQEESLSV VSCLSTRLQQ RLIHTIVSQA  240
IIRLAFSERE KKVGALAKTK KEKMDQNLYR KCLVILSVMA MIGTSTAAYA GSPWRQASAT  300
FYGDETARET MGGACGYGNL WDSGYGAATS ALSTVLFNDG YSCGQCFQIR CVSSPNCYYG  360
SPATVVTATN ICPPNWGQDS NNGGWCNPPR AHFDLAKPAF MKIANWKAGI IPVSYRRVAC  420
KRTGGIRFKF EGNGYWLLVY VMNVGGAGDI KSMAVKGSRT NWIDMSHNWG ASYQAFSSLY  480
GQSLSFRLTS YTTRQTIYAW NAAPPNWSAG QTYKSNANFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2hcz_X1e-1928651912244Beta-expansin 1a
Cis-element ? help Back to Top
SourceLink
PlantRegMap676732396
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6212780.0KC621278.1 Brassica rapa alpha-expansin protein 18 (EXPA18) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018509644.10.0PREDICTED: expansin-A18 isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.15e-91bHLH family protein