PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676730454 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | Dof | ||||||||
Protein Properties | Length: 201aa MW: 22274.3 Da PI: 4.4538 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 102.3 | 3e-32 | 25 | 69 | 6 | 50 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvP 50 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvP 676730454 25 PSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVP 69 58******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 25.192 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.5E-28 | 26 | 70 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 27 | 63 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-22 | 27 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MERTEALTSS FIWRPNANAN AEITPSCPRC GSSNTKFCYY NNYSLTQPRY FCKGCRRYWT 60 KGGSLRNVPP DEPTLQENRD YAAVVATDFL VDNPTGDSTE PSWSMDIGDG HQHHYDHQVE 120 HIVEACGYNG LPPFPGEELL SIDTNGVWSD ALLVGHNHVD VGGMTPAQAV HEPVVHFADE 180 SNDSTNLLFG SWSPFDFSAD G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676730454 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL050300 | 8e-89 | AL050300.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F22O6. | |||
GenBank | CP002686 | 8e-89 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010503986.1 | 1e-123 | PREDICTED: dof zinc finger protein DOF3.5 | ||||
Swissprot | Q9SVC5 | 1e-119 | DOF35_ARATH; Dof zinc finger protein DOF3.5 | ||||
TrEMBL | D7LU63 | 1e-117 | D7LU63_ARALL; Dof-type zinc finger domain-containing protein | ||||
STRING | XP_010503986.1 | 1e-122 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9141 | 22 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 1e-121 | Dof family protein |