PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676729134

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

LBD

Protein Properties

Length: 287aa MW: 31244.1 Da PI: 8.7812

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676729134	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.5	2.6e-39	70	169	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdP+yG++g i++lq+++++l++el ++++e 676729134 70 PCAACKLLRRRCADECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTE 169 7*********************************************************************************************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.095	69	170	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-40	70	167	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MSRDRLDSRW PNLFGAELTG NNREGFGEYY EIVKKVKKDP TCEKTTDHAV MGIRRHVAVP 60 PGTTLNTVTP CAACKLLRRR CADECPFSPY FSPHEPHKFA AVHKVFGASN VSKMLLEVGE 120 SQRGDAANSL VYEANLRLRD PIYGCMGAIS ALQHHIQSLQ SELTTVRTEI LRHKYREAAT 180 ISSLQNNNNN NFRNNTTSVS DHAALAASIL LPPPLPPPPP PRPPRLLSSQ PAPPPTPPAS 240 LPSPSMVVSS SSSSNSSATN SMYNPPPSSA AGYSNSLSSD NNVHYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-40	63	181	4	122	LOB family transfactor Ramosa2.1
5ly0_B	1e-40	63	181	4	122	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676729134

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433132.1	1e-141	PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 13
Swissprot	Q9AT61	1e-131	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A3P6BXH1	1e-132	A0A3P6BXH1_BRAOL; Uncharacterized protein (Fragment)
STRING	Bo4g059520.1	1e-133	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-114	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]