PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727942
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 262aa    MW: 29531.3 Da    PI: 7.3476
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727942genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.9e-083176346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE + + +a + +  +   +W +Ia++++ g+t+ ++   + k
        676727942 31 VWTKEENKMFERALAIYAEDlpdRWFKIASMIP-GKTAFDVMKQYSK 76
                     7*****************99*************.****999988876 PP
2Myb_DNA-binding39.99.8e-13127171347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
        676727942 127 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 171
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.552780IPR017884SANT domain
SMARTSM007174.0E-72880IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-53076IPR009057Homeodomain-like
SuperFamilySSF466895.11E-123085IPR009057Homeodomain-like
PfamPF002491.8E-63176IPR001005SANT/Myb domain
CDDcd001676.49E-83277No hitNo description
PROSITE profilePS5129419.439120176IPR017930Myb domain
SuperFamilySSF466892.42E-15122175IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17123175IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.3E-11124176IPR009057Homeodomain-like
SMARTSM007171.7E-10124174IPR001005SANT/Myb domain
PfamPF002494.2E-10127171IPR001005SANT/Myb domain
CDDcd001674.16E-9127171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
METLHPLSHV PVSDHRFVVH EMMSLQSSSS VWTKEENKMF ERALAIYAED LPDRWFKIAS  60
MIPGKTAFDV MKQYSKLEED VFDIEEGRVP IPGYPAASPP FVVASDTCRK RPNGARGSDH  120
DRKKGVPWTE EEHRRFLLGL LKYGKGDWRN ISRNFVVSKT PTQVASHAQK YYQRQLSGAK  180
DKRRPSIHDI TTVNLLNANL NRSFSDHRDI LPDLGFIEKD NAEEGLMFMS QNLSSADLFS  240
PSSAPFDAAV NFVGANVFSA GA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-172294173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727942
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486961.11e-167PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H75e-71DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3N6Q5511e-166A0A3N6Q551_BRACR; Uncharacterized protein
STRINGBostr.19424s1061.1.p1e-167(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-168MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]