PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727568
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 321aa    MW: 35424.2 Da    PI: 6.598
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727568genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.9e-18233266134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  676727568 233 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 266
                99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.5E-931320IPR016679Transcription factor, GATA, plant
SMARTSM004018.4E-17227277IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.793227263IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14231264IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.7E-15231290No hitNo description
CDDcd002029.44E-15232279No hitNo description
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
PfamPF003204.1E-16233266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MIGQSFPEDL DCGNFFDNMD DLIDFPGGDI DVGFGIGDSD SFPNIWTTHH DTWPGSSDPL  60
FSSNTNSDSS PELYVPFEDI VKVERPASFV EESLVEKKED SFSTNTDSSS SHSQFRSSSP  120
VSVLESSSSS SQTTNTTSLV LPGKHGRPRT KRPRPPVQEK DRVLKDSVCG ADSRLIIRIP  180
KQFLSDHSKM ITKKKKKKAK VTSSSSSSGV DLETNGNNNV DSYSSEQHPV RQCMHCEVTK  240
TPQWRLGPMG PKTLCNACGV RYKSGRLFPE YRPAASPTFT PALHSNSHKK VAEMRSKRCS  300
DGSYTNEEND LIPNNAYIGV E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150154KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727568
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534610.0AK353461.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-37-G07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022573680.10.0GATA transcription factor 8
SwissprotQ9SV301e-175GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A3P6CU000.0A0A3P6CU00_BRACM; GATA transcription factor
STRINGBo4g118340.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-137GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]