PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676727278 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 27562.7 Da PI: 6.5132 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.8 | 2.6e-05 | 145 | 185 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR +iN+++ L++++P + k + a++L + ++Y++sLq 676727278 145 VRRGKINERLRCLQDIVPGC----YKSMGMATMLDEIINYVQSLQ 185 6******************8....366999**************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-12 | 130 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.928 | 134 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-4 | 138 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-12 | 144 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.81E-6 | 146 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MANFESLSSE FQTIAMDIYS SLTQATDLNN NNSSSLQFQT LPPFSTCLDS LFLHRHQQQL 60 LDFPGKFSGS DNNFSSTSTL YHSDHNNVDE TKKRKALLQT LSSSENSGVS DNLNINTTET 120 GCSRRSKRLK KQKQEEEKER EVVHVRRGKI NERLRCLQDI VPGCYKSMGM ATMLDEIINY 180 VQSLQNQVEF LSMKLTAASS FYDFNSETDA VDSMQRAKAR EAVEMGRQTR DGSPVFHLST 240 WSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676727278 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488579 | 1e-128 | AF488579.1 Arabidopsis thaliana clone bHLH044 putative bHLH transcription factor mRNA, partial sequence. | |||
GenBank | AK117269 | 1e-128 | AK117269.1 Arabidopsis thaliana At1g18400 mRNA for putative bHLH transcription factor (bHLH044), complete cds, clone: RAFL16-82-F22. | |||
GenBank | AY138253 | 1e-128 | AY138253.1 Arabidopsis thaliana putative bHLH transcription factor (BEE1) mRNA, complete cds. | |||
GenBank | BT005268 | 1e-128 | BT005268.1 Arabidopsis thaliana At1g18400 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482284.1 | 1e-145 | PREDICTED: transcription factor BEE 1 | ||||
Swissprot | Q8GZ13 | 1e-111 | BEE1_ARATH; Transcription factor BEE 1 | ||||
TrEMBL | A0A3P5YFI0 | 1e-142 | A0A3P5YFI0_BRACM; Uncharacterized protein | ||||
STRING | Bo5g025360.1 | 1e-132 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2997 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18400.1 | 1e-101 | BR enhanced expression 1 |
Publications ? help Back to Top | |||
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