PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727152
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WOX
Protein Properties Length: 277aa    MW: 32349.1 Da    PI: 6.9366
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727152genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.2e-2055113356
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                +R+++t+eq   Lee++++ +r p++++++++A+kl    +++ ++V++WFqN++ +e+
  676727152  55 PRWNPTPEQMMMLEEVYRSgTRRPTTQQIQDIASKLqkygRIEGKNVFYWFQNHKSRER 113
                8*****************99*************************************98 PP
2Wus_type_Homeobox107.86.2e-3554115364
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        ++RW+PtpeQ+++Lee+y+sG+r P++++iq+i+++L++yG+ie+kNVfyWFQN+k+Rer k
          676727152  54 QPRWNPTPEQMMMLEEVYRSGTRRPTTQQIQDIASKLQKYGRIEGKNVFYWFQNHKSRERLK 115
                        68**********************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.61250115IPR001356Homeobox domain
SuperFamilySSF466891.5E-1152114IPR009057Homeodomain-like
SMARTSM003890.00152119IPR001356Homeobox domain
CDDcd000863.31E-554113No hitNo description
PfamPF000461.9E-1755113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-855113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGYNKDLIPP FLPYSANCKT SHSLAHCNVN DTRNDEQIIT GSAGEHKDRE KYMQPRWNPT  60
PEQMMMLEEV YRSGTRRPTT QQIQDIASKL QKYGRIEGKN VFYWFQNHKS RERLKRRRPD  120
QQGVTTINDV HGEPLTGNKD SPPVSRRRGD HRVIHTRTCL SSLPTHPQIN PIDDGKWEEY  180
GRGLVEEKEA TCQSQINPIN TSDFNYNLIV ASKGSQEAEQ QYKLNEEEEE ETRKSRTLDL  240
FPVVENQEKT GFAEMNTKSN LLCCNYYYYY EFMPLMN
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727152
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008066.11e-138WUSCHEL-related homeobox 6
TrEMBLA0A0D3DX851e-142A0A0D3DX85_BRAOL; Uncharacterized protein
STRINGBo8g106350.11e-143(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133691828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.12e-41WOX family protein