PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676727078 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24262.8 Da PI: 9.3781 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.8 | 1.4e-23 | 50 | 98 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+++s+r+vtfskRr g++KKA ELSvL++a++avi fs+ g++y++ 676727078 50 KEIKEDSKRHVTFSKRRRGLFKKAAELSVLTGAKIAVITFSKCGRIYTF 98 689*********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.726 | 42 | 102 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.7E-25 | 42 | 101 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.15E-23 | 43 | 120 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-18 | 44 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.6E-22 | 52 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-18 | 64 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-18 | 79 | 100 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MEEVRETSSM TLLTPNDQFQ NTDALVSQFK KVLTTKTPKT TRGRQKIEIK EIKEDSKRHV 60 TFSKRRRGLF KKAAELSVLT GAKIAVITFS KCGRIYTFGN VDTLISKYLR KSPVDLDVYH 120 GDDAAEEEGK PWWERPVESV PDKDLEDYVA AMSVLRDKLG KKIIEMGNID RTVPAWPINV 180 MNWTSTMDMQ SLESMTDGLT RCRLGQNDER VR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 4e-14 | 44 | 98 | 18 | 72 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 4e-14 | 44 | 98 | 18 | 72 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676727078 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006416719.2 | 1e-108 | MADS-box transcription factor 23 | ||||
TrEMBL | A0A397Y927 | 1e-107 | A0A397Y927_BRACM; Uncharacterized protein | ||||
STRING | Bra026674.1-P | 1e-107 | (Brassica rapa) | ||||
STRING | XP_006416719.1 | 1e-107 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4697 | 20 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17310.1 | 6e-89 | M-type_MADS family protein |