PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676724796
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 676aa    MW: 77666.9 Da    PI: 6.5616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676724796genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07395452238
                      SSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......................tWktIartmgkgRtlk 38 
                      +r+T+eEdel+++av ++  +                      +Wk Ia+ ++  Rt  
        676724796 395 KRFTKEEDELIKKAVLKYVENhdlgddgidmvmnckshkqvrgCWKEIAAALP-LRTKT 452
                      69*****************99********************************.77754 PP
2Myb_DNA-binding24.47e-08468510146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g W++e+ e  +++ +++G++ Wkt a  mg  +++k++k+ w+ 
        676724796 468 KGIWSKEDFEVVIEYERKHGKD-WKTLADAMG--KSRKHVKDAWRR 510
                      678*****************99.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.262389462IPR017877Myb-like domain
SMARTSM007172.3E-5393464IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-6395457IPR009057Homeodomain-like
SuperFamilySSF466894.74E-8442510IPR009057Homeodomain-like
PROSITE profilePS500907.387463512IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-5464510IPR009057Homeodomain-like
SMARTSM007170.046467514IPR001005SANT/Myb domain
PfamPF139214.5E-9471529No hitNo description
PROSITE profilePS500905.808513581IPR017877Myb-like domain
SMARTSM0071739517584IPR001005SANT/Myb domain
PROSITE profilePS500906.574583636IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MVRASNFFKL DSLESDSDEE RNKSKATVDR SLVKKKPEKE IVNSETDDGV NKSNKKSKER  60
KVESEAVDDD DDNGGKKSKK KQKQQSGGDE GALVNTDDDD FAKRKLDFND MGGEENKKDE  120
SKKKKKRPSV DDSEVEESSL SSGKDGKKKR KEKKQSQDSV LEGNKNNDGM KDADQIQSES  180
PEAEDAEKKR KKRKKQSEVE ENNKDSTEGS EKKLNEDSEA EGNDLNSKEN AKKERKMKKK  240
KKQSEDPEAE ENNNEGSDAE GNGLKSSKDP KKKKKKKKQS EDSEVEENSK DSTEDAEKKL  300
SEHSEAEEND LNSNAKKERK MKKKEKKKKQ SEDPEAEENN NDGAKTKKRK KEQKGADSEE  360
GEGVTTPSSK SAKRVKFSDQ VEVFPEIEKV KLSGKRFTKE EDELIKKAVL KYVENHDLGD  420
DGIDMVMNCK SHKQVRGCWK EIAAALPLRT KTGVYDRAHV LFEQGSSKGI WSKEDFEVVI  480
EYERKHGKDW KTLADAMGKS RKHVKDAWRR IRLASKNKGQ WSREEYQNLF DLVNKDLRMK  540
AFQEKRSKHG MLRDNIPWMT ISDQLRTRDH SVSCMKWYDK LVSPMVAEEI WANVDDYRLL  600
DELTSLDAAC VDDVDWDYLL DNRDGDTCRR RWNQMVHHIG LPGTKTFAEQ VEILSQRYCP  660
DIAEDREDFD NRPFDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102124KRKLDFNDMGGEENKKDESKKKK
2271277KKKKKKK
3318326RKMKKKEKK
4346350KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676724796
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484875.10.0PREDICTED: RNA polymerase I termination factor
TrEMBLA0A1J3FAK80.0A0A1J3FAK8_NOCCA; Transcription termination factor 1
STRINGBra025529.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-172MYB_related family protein