PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723854
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 346aa    MW: 39103.6 Da    PI: 9.1528
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723854genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19188238256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r++lg+f tae+Aa a++ a+  l+ge
  676723854 188 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEQAAMAYDTAAYILRGE 238
                59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.00E-31187247No hitNo description
SuperFamilySSF541711.44E-22188246IPR016177DNA-binding domain
PROSITE profilePS5103222.8188245IPR001471AP2/ERF domain
SMARTSM003805.2E-35188251IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-32188246IPR001471AP2/ERF domain
PRINTSPR003673.5E-11189200IPR001471AP2/ERF domain
PfamPF008471.4E-12189238IPR001471AP2/ERF domain
PRINTSPR003673.5E-11211227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEDQFPEMET SFIHDKLLSS GFYGILSSSA PPQLLGVPII LEGMKYPSLS SPQSYFVSPH  60
ELTSLIHQQS PVASVPWNFL DSFPQSQRPD LHQPCKPPNL ALFLKEPKLL ELSQSNSNMI  120
PYHNYIPNSL HQSDQNRNEW VEINKTLTSY PSKGFGNYWL STTKTQPMKL ASGTRTRKVV  180
QTTTPTKLYR GVRQRHWGKW VAEIRLPRNR TRVWLGTFET AEQAAMAYDT AAYILRGEYA  240
HLNFPDLKHQ LKSGSLRCMI ASLLESKIQQ ISSPQVISSG NSPSPSLKEE TLEPKSNIKT  300
ESGDVVIMKK QKNHKEVIEG DGVQLSRMPS LDMDLIWDAL SLPHSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21187245160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-21187245463ATERF1
3gcc_A3e-21187245463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676723854
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481819.10.0PREDICTED: ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ00.0ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A397ZKI00.0A0A397ZKI0_BRACM; Uncharacterized protein
STRINGXP_010440558.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.10.0ERF family protein