PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723368
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 193aa    MW: 22299.1 Da    PI: 10.5609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723368genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.58.5e-071680254
               HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C.............TTS-.STCHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPk.as..........kapskK.lsKaeiLekAveYIksL 54
               r++ n rE+ RR r+++ f+ L +++ + ++          + + +K l   +   +A+ Y+ +L
  676723368 16 REKRNLREKERRMRMKDLFFLLASHVSPtLYarnqfhtlvsASKITKqLPVPQLIDQATSYMVQL 80
               8899**********************995658888888888666666688888888888777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.8641480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-81498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-61694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDREREMEEG RSLSLREKRN LREKERRMRM KDLFFLLASH VSPTLYARNQ FHTLVSASKI  60
TKQLPVPQLI DQATSYMVQL KEKVKYLKEK KKTLLGGEVG CHSGGSSSSL LPKLSIHSRD  120
SIIEMNLITN VNMKRLTLHK LMRVFEEEGA QVMSANLQNL NDRTAYTIIA QAIICRIGID  180
PTRIEKRVRD IIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025LREKER
Cis-element ? help Back to Top
SourceLink
PlantRegMap676723368
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022547604.15e-96transcription factor bHLH168-like isoform X1
SwissprotQ9XIJ12e-85BH168_ARATH; Transcription factor bHLH168
TrEMBLA0A078IY003e-95A0A078IY00_BRANA; BnaC08g49810D protein
STRINGfgenesh2_kg.1__1131__AT1G10586.11e-85(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.15e-37bHLH family protein