PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723366
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 175aa    MW: 20265.6 Da    PI: 10.2493
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723366genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-051745230
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPka 30
               r+  n rE+ RR+r+++ f+ L +++ + 
  676723366 17 REQRNLREKERRNRMKHLFFILSSHVSPT 45
               8889*********************9774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.18E-41568No hitNo description
PROSITE profilePS5088810.9821564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-111582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-71779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-42170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MERRRREAGE GSSMSSREQR NLREKERRNR MKHLFFILSS HVSPTHRLPV PQLIDQAASY  60
MIQLKEKVNH LREKKRTLLG EVGNLSDGSS PLLPKLCIYS RDSIVKMNLI MDLNMKRVML  120
HELVSVFEEE GAQVMSANLQ NLNDRIIYTI IAQAIICRIG IDPSRIEEKV RDIIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
116ERRRRE
22126LREKER
Cis-element ? help Back to Top
SourceLink
PlantRegMap676723366
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013676345.11e-102transcription factor bHLH168
SwissprotF4I4E16e-93BH167_ARATH; Transcription factor bHLH167
SwissprotQ9XIJ14e-93BH168_ARATH; Transcription factor bHLH168
TrEMBLA0A3P5YCK21e-100A0A3P5YCK2_BRACM; Uncharacterized protein
STRINGBo5g012060.11e-101(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-76bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]