PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676723274 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 141aa MW: 15885.1 Da PI: 9.2247 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00043 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk k + ++H +++ 676723274 69 FSCGKCGKALAVKGDWRTHEKNC 91 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.35E-6 | 54 | 89 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 55 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 141 aa Download sequence Send to blast |
MHMWGHGSEF RKGADSLKGT TQPAAILRLP CYCCAEGCKN NINHPRSKPL KDFRTLQTHY 60 KRKHGSKPFS CGKCGKALAV KGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIKSFGNGH 120 SPHPSLSFDG FEDDTECVTT E |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676723274 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC011438 | 1e-139 | AC011438.3 Genomic sequence for Arabidopsis thaliana BAC T23G18 from chromosome I, complete sequence. | |||
GenBank | AF254448 | 1e-139 | AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds. | |||
GenBank | AK118851 | 1e-139 | AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22. | |||
GenBank | AY090918 | 1e-139 | AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-139 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010475619.1 | 1e-101 | PREDICTED: zinc finger protein WIP3-like | ||||
Swissprot | Q9SGD1 | 1e-100 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A0D3C8H0 | 4e-99 | A0A0D3C8H0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EC83 | 4e-99 | A0A3P6EC83_BRAOL; Uncharacterized protein | ||||
STRING | XP_010475619.1 | 1e-100 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-103 | WIP domain protein 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|